Commit d1f1fd43 authored by Celine Mercier's avatar Celine Mercier

Minor fixes

parent 75a28929
......@@ -2,7 +2,6 @@
from obitools3.apps.progress cimport ProgressBar # @UnresolvedImport
from obitools3.dms.dms cimport DMS
from obitools3.dms.capi.obidms cimport OBIDMS_p
from obitools3.dms.view import RollbackException
from obitools3.dms.capi.obiclean cimport obi_clean
from obitools3.apps.optiongroups import addMinimalInputOption, addMinimalOutputOption
......
......@@ -230,7 +230,7 @@ int thresholdLCS4(int32_t reflen, int32_t lcs)
}
Kmer_table_p hash_seq_column(Obiview_p view, OBIDMS_column_p seq_col, index_t seq_idx) // TODO move in another file (obi_align.c)
Kmer_table_p hash_seq_column(Obiview_p view, OBIDMS_column_p seq_col, index_t seq_idx) // TODO move in another file (obi_lcs.c?)
{
size_t i;
size_t seq_count;
......@@ -347,7 +347,7 @@ void align_filters(Kmer_table_p ktable, Obi_blob_p seq1, Obi_blob_p seq2, index_
double threshold, bool normalize, int reference, bool similarity_mode, double* score, int* LCSmin,
bool can_be_identical)
{ // score takes value -2 if filters are not passed, -1 if filters are passed and >= 0 with max score if the 2 sequences are identical.
// TODO move to obi_align.c
// TODO move to obi_lcs.c?
int l1;
int l2;
......
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