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OBITools
OBITools3
Commits
d1f1fd43
Commit
d1f1fd43
authored
Nov 07, 2018
by
Celine Mercier
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Minor fixes
parent
75a28929
Changes
2
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2 changed files
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2 additions
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3 deletions
+2
-3
python/obitools3/commands/clean.pyx
python/obitools3/commands/clean.pyx
+0
-1
src/upperband.c
src/upperband.c
+2
-2
No files found.
python/obitools3/commands/clean.pyx
View file @
d1f1fd43
...
...
@@ -2,7 +2,6 @@
from
obitools3.apps.progress
cimport
ProgressBar
# @UnresolvedImport
from
obitools3.dms.dms
cimport
DMS
from
obitools3.dms.capi.obidms
cimport
OBIDMS_p
from
obitools3.dms.view
import
RollbackException
from
obitools3.dms.capi.obiclean
cimport
obi_clean
from
obitools3.apps.optiongroups
import
addMinimalInputOption
,
addMinimalOutputOption
...
...
src/upperband.c
View file @
d1f1fd43
...
...
@@ -230,7 +230,7 @@ int thresholdLCS4(int32_t reflen, int32_t lcs)
}
Kmer_table_p
hash_seq_column
(
Obiview_p
view
,
OBIDMS_column_p
seq_col
,
index_t
seq_idx
)
// TODO move in another file (obi_
align.c
)
Kmer_table_p
hash_seq_column
(
Obiview_p
view
,
OBIDMS_column_p
seq_col
,
index_t
seq_idx
)
// TODO move in another file (obi_
lcs.c?
)
{
size_t
i
;
size_t
seq_count
;
...
...
@@ -347,7 +347,7 @@ void align_filters(Kmer_table_p ktable, Obi_blob_p seq1, Obi_blob_p seq2, index_
double
threshold
,
bool
normalize
,
int
reference
,
bool
similarity_mode
,
double
*
score
,
int
*
LCSmin
,
bool
can_be_identical
)
{
// score takes value -2 if filters are not passed, -1 if filters are passed and >= 0 with max score if the 2 sequences are identical.
// TODO move to obi_
align.c
// TODO move to obi_
lcs.c?
int
l1
;
int
l2
;
...
...
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