ngsfilter: now setting 'reversed' tag to False instead of None when

false

ngsfilter: now setting 'reversed' tag to False instead of None when
false
7593673f · Celine Mercier · aa01236c · 7593673f
Commit 7593673f authored Jun 17, 2020 by Celine Mercier
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ngsfilter.pyx python/obitools3/commands/ngsfilter.pyx +2 -0

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--- a/python/obitools3/commands/ngsfilter.pyx
+++ b/python/obitools3/commands/ngsfilter.pyx
@@ -479,6 +479,8 @@ cdef tuple annotate(sequences, infos, no_tags, verbose=False):
    if not directmatch[0].forward:
        sequences[0] = sequences[0].reverse_complement
        sequences[0][b'reversed'] = True   # used by the alignpairedend tool (in kmer_similarity.c)
+    else:
+        sequences[0][b'reversed'] = False   # used by the alignpairedend tool (in kmer_similarity.c)

    sample=None
    if not no_tags: