Cython: minor fixes

6a8670d2 · Celine Mercier · ec73fa84 · 6a8670d2 · 6a8670d2
Commit 6a8670d2 authored Oct 17, 2018 by Celine Mercier
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python/obitools3/dms/taxo/taxo.pyx python/obitools3/dms/taxo/taxo.pyx +1 -1

python/obitools3/parsers/fasta.pyx python/obitools3/parsers/fasta.pyx +1 -1

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--- a/python/obitools3/dms/taxo/taxo.pyx
+++ b/python/obitools3/dms/taxo/taxo.pyx
@@ -110,7 +110,7 @@ cdef class Taxonomy(OBIWrapper) :
        if type(ref) == int :
            return self.get_taxon_by_taxid(ref)
        else :
-            raise Exception("Not implemented")
+            raise NotImplementedError()


    cpdef Taxon get_taxon_by_taxid(self, int taxid):   # TODO check deleted taxon behavior (403122)

--- a/python/obitools3/parsers/fasta.pyx
+++ b/python/obitools3/parsers/fasta.pyx
@@ -101,7 +101,7 @@ def fastaNucIterator(lineiterator,
    cdef dict       tags
    cdef list       s
    cdef bytes      sequence
-    cdef int        lines_to_skip, ionly, read
+    cdef int        skipped, ionly, read
    cdef Nuc_Seq    seq
    
    if only is None: