Commit 4e75514b by Celine Mercier

obi import: fixed entry count

parent 1ed2d45a
......@@ -72,6 +72,8 @@ cpdef int count_entries(file, bytes format):
return -1
mmapped_file = mmap.mmap(f.fileno(), 0, access=mmap.ACCESS_READ)
total_count += len(re.findall(sep, mmapped_file))
if format != b"ngsfilter" and format != b"tabular":
total_count += 1 # adding +1 for 1st entry because separators include \n (ngsfilter and tabular already count one more because of last \n)
if len(files) > 1:
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