Commit 2f60e91d by Eric Coissac

Comment the install of the packages

parent 7ba27b6a
......@@ -4,9 +4,11 @@ import sys
import re
import subprocess
from distutils.core import setup,Extension
from distutils import log
from distutils.core import setup
from distutils.core import Extension
from distutils.sysconfig import get_python_lib
from Cython.Build import cythonize
import os.path
from distutils import log
......@@ -14,9 +16,6 @@ from distutils.extension import Extension
sys.path.append(os.path.abspath("python"))
dependencies = ['sphinx',"Cython"]
def findPackage(root,base=None):
modules=[]
if base is None:
......@@ -28,6 +27,7 @@ def findPackage(root,base=None):
return modules
def RunMake():
log.info("Build the build/cobject directory")
try:
os.mkdir("build")
except OSError:
......@@ -40,16 +40,23 @@ def RunMake():
oldwd = os.getcwd()
os.chdir("build/cobject")
install_clibdir_option="-DPYTHONLIB:STRING='%s'" % get_python_lib()
log.info("Run CMake")
subprocess.call(['cmake', install_clibdir_option, '../../src'])
log.info("Compile the shared C library")
subprocess.call(['make','install']) # temporary fix but should be in src
os.chdir(oldwd)
#def install_dependencies(deps):
# for r in deps:
# log.info("Installing dependency : %s" %r)
# subprocess.call(['pip','install',r])
PACKAGE = "OBITools3"
VERSION = "0.0.0"
VERSION = "0.0.6"
AUTHOR = 'Eric Coissac'
EMAIL = 'eric@metabarcoding.org'
URL = "metabarcoding.org/obitools3"
URL = "http://metabarcoding.org/obitools3"
LICENSE = "CeCILL-V2"
DESCRIPTION = "Tools and library for DNA metabarcoding",
PYTHONMIN = '3.7'
......@@ -65,9 +72,11 @@ REQUIRES = ['Cython>=0.24',
os.environ['CFLAGS'] = '-O3 -Wall -I "src" -I "src/libecoPCR" -I "src/libjson"'
#install_dependencies(REQUIRES)
RunMake()
from Cython.Build import cythonize
cython_src = [x for x in glob.iglob('python/obitools3/**/*.pyx',
recursive=True
)
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment