Commit 29c56572 authored by Eric Coissac's avatar Eric Coissac

Add cfiles everywhere ;-)

parent de3d12af
../../../src/obi_lcs.h
../../../src/obi_lcs.c
../../../src/obierrno.h
../../../src/obierrno.c
../../../src/upperband.h
../../../src/upperband.c
../../../src/sse_banded_LCS_alignment.h
../../../src/sse_banded_LCS_alignment.c
../../../src/obiblob.h
../../../src/obiblob.c
../../../src/utils.h
../../../src/utils.c
../../../src/obidms.h
../../../src/obidms.c
../../../src/libjson/json_utils.h
../../../src/libjson/json_utils.c
../../../src/libjson/cJSON.h
../../../src/libjson/cJSON.c
../../../src/obiavl.h
../../../src/obiavl.c
../../../src/bloom.h
../../../src/bloom.c
../../../src/crc64.h
../../../src/crc64.c
../../../src/murmurhash2.h
../../../src/murmurhash2.c
../../../src/obidmscolumn.h
../../../src/obidmscolumn.c
../../../src/obitypes.h
../../../src/obitypes.c
../../../src/obidmscolumndir.h
../../../src/obidmscolumndir.c
../../../src/obiblob_indexer.h
../../../src/obiblob_indexer.c
../../../src/obiview.h
../../../src/obiview.c
../../../src/hashtable.h
../../../src/hashtable.c
../../../src/linked_list.h
../../../src/linked_list.c
../../../src/obidmscolumn_array.h
../../../src/obidmscolumn_array.c
../../../src/obidmscolumn_blob.h
../../../src/obidmscolumn_blob.c
../../../src/obidmscolumn_idx.h
../../../src/obidmscolumn_idx.c
../../../src/obidmscolumn_bool.h
../../../src/obidmscolumn_bool.c
../../../src/obidmscolumn_char.h
../../../src/obidmscolumn_char.c
../../../src/obidmscolumn_float.h
../../../src/obidmscolumn_float.c
../../../src/obidmscolumn_int.h
../../../src/obidmscolumn_int.c
../../../src/obidmscolumn_qual.h
../../../src/obidmscolumn_qual.c
../../../src/obidmscolumn_seq.h
../../../src/obidmscolumn_seq.c
../../../src/obidmscolumn_str.h
../../../src/obidmscolumn_str.c
../../../src/array_indexer.h
../../../src/array_indexer.c
../../../src/char_str_indexer.h
../../../src/char_str_indexer.c
../../../src/dna_seq_indexer.h
../../../src/dna_seq_indexer.c
../../../src/encode.c
../../../src/encode.h
../../../src/uint8_indexer.c
../../../src/uint8_indexer.h
../../../src/build_reference_db.c
../../../src/build_reference_db.h
../../../src/kmer_similarity.c
../../../src/kmer_similarity.h
../../../src/obi_clean.c
../../../src/obi_clean.h
../../../src/obi_ecopcr.c
../../../src/obi_ecopcr.h
../../../src/obi_ecotag.c
../../../src/obi_ecotag.h
../../../src/obidms_taxonomy.c
../../../src/obidms_taxonomy.h
../../../src/obilittlebigman.c
../../../src/obilittlebigman.h
../../../src/_sse.h
../../../src/obidebug.h
../../../src/libecoPCR/libapat/CODES/dft_code.h
../../../src/libecoPCR/libapat/CODES/dna_code.h
../../../src/libecoPCR/libapat/CODES/prot_code.h
../../../src/libecoPCR/libapat/apat_parse.c
../../../src/libecoPCR/libapat/apat_search.c
../../../src/libecoPCR/libapat/apat.h
../../../src/libecoPCR/libapat/Gmach.h
../../../src/libecoPCR/libapat/Gtypes.h
../../../src/libecoPCR/libapat/libstki.c
../../../src/libecoPCR/libapat/libstki.h
../../../src/libecoPCR/libthermo/nnparams.h
../../../src/libecoPCR/libthermo/nnparams.c
../../../src/libecoPCR/ecoapat.c
../../../src/libecoPCR/ecodna.c
../../../src/libecoPCR/ecoError.c
../../../src/libecoPCR/ecoMalloc.c
../../../src/libecoPCR/ecoPCR.h
../../../src/obi_lcs.h
../../../src/obi_lcs.c
../../../src/obierrno.h
../../../src/obierrno.c
../../../src/upperband.h
../../../src/upperband.c
../../../src/sse_banded_LCS_alignment.h
../../../src/sse_banded_LCS_alignment.c
../../../src/obiblob.h
../../../src/obiblob.c
../../../src/utils.h
../../../src/utils.c
../../../src/obidms.h
../../../src/obidms.c
../../../src/libjson/json_utils.h
../../../src/libjson/json_utils.c
../../../src/libjson/cJSON.h
../../../src/libjson/cJSON.c
../../../src/obiavl.h
../../../src/obiavl.c
../../../src/bloom.h
../../../src/bloom.c
../../../src/crc64.h
../../../src/crc64.c
../../../src/murmurhash2.h
../../../src/murmurhash2.c
../../../src/obidmscolumn.h
../../../src/obidmscolumn.c
../../../src/obitypes.h
../../../src/obitypes.c
../../../src/obidmscolumndir.h
../../../src/obidmscolumndir.c
../../../src/obiblob_indexer.h
../../../src/obiblob_indexer.c
../../../src/obiview.h
../../../src/obiview.c
../../../src/hashtable.h
../../../src/hashtable.c
../../../src/linked_list.h
../../../src/linked_list.c
../../../src/obidmscolumn_array.h
../../../src/obidmscolumn_array.c
../../../src/obidmscolumn_blob.h
../../../src/obidmscolumn_blob.c
../../../src/obidmscolumn_idx.h
../../../src/obidmscolumn_idx.c
../../../src/obidmscolumn_bool.h
../../../src/obidmscolumn_bool.c
../../../src/obidmscolumn_char.h
../../../src/obidmscolumn_char.c
../../../src/obidmscolumn_float.h
../../../src/obidmscolumn_float.c
../../../src/obidmscolumn_int.h
../../../src/obidmscolumn_int.c
../../../src/obidmscolumn_qual.h
../../../src/obidmscolumn_qual.c
../../../src/obidmscolumn_seq.h
../../../src/obidmscolumn_seq.c
../../../src/obidmscolumn_str.h
../../../src/obidmscolumn_str.c
../../../src/array_indexer.h
../../../src/array_indexer.c
../../../src/char_str_indexer.h
../../../src/char_str_indexer.c
../../../src/dna_seq_indexer.h
../../../src/dna_seq_indexer.c
../../../src/encode.c
../../../src/encode.h
../../../src/uint8_indexer.c
../../../src/uint8_indexer.h
../../../src/build_reference_db.c
../../../src/build_reference_db.h
../../../src/kmer_similarity.c
../../../src/kmer_similarity.h
../../../src/obi_clean.c
../../../src/obi_clean.h
../../../src/obi_ecopcr.c
../../../src/obi_ecopcr.h
../../../src/obi_ecotag.c
../../../src/obi_ecotag.h
../../../src/obidms_taxonomy.c
../../../src/obidms_taxonomy.h
../../../src/obilittlebigman.c
../../../src/obilittlebigman.h
../../../src/_sse.h
../../../src/obidebug.h
../../../src/libecoPCR/libapat/CODES/dft_code.h
../../../src/libecoPCR/libapat/CODES/dna_code.h
../../../src/libecoPCR/libapat/CODES/prot_code.h
../../../src/libecoPCR/libapat/apat_parse.c
../../../src/libecoPCR/libapat/apat_search.c
../../../src/libecoPCR/libapat/apat.h
../../../src/libecoPCR/libapat/Gmach.h
../../../src/libecoPCR/libapat/Gtypes.h
../../../src/libecoPCR/libapat/libstki.c
../../../src/libecoPCR/libapat/libstki.h
../../../src/libecoPCR/libthermo/nnparams.h
../../../src/libecoPCR/libthermo/nnparams.c
../../../src/libecoPCR/ecoapat.c
../../../src/libecoPCR/ecodna.c
../../../src/libecoPCR/ecoError.c
../../../src/libecoPCR/ecoMalloc.c
../../../src/libecoPCR/ecoPCR.h
../../../src/obi_lcs.h
../../../src/obi_lcs.c
../../../src/obierrno.h
../../../src/obierrno.c
../../../src/upperband.h
../../../src/upperband.c
../../../src/sse_banded_LCS_alignment.h
../../../src/sse_banded_LCS_alignment.c
../../../src/obiblob.h
../../../src/obiblob.c
../../../src/utils.h
../../../src/utils.c
../../../src/obidms.h
../../../src/obidms.c
../../../src/libjson/json_utils.h
../../../src/libjson/json_utils.c
../../../src/libjson/cJSON.h
../../../src/libjson/cJSON.c
../../../src/obiavl.h
../../../src/obiavl.c
../../../src/bloom.h
../../../src/bloom.c
../../../src/crc64.h
../../../src/crc64.c
../../../src/murmurhash2.h
../../../src/murmurhash2.c
../../../src/obidmscolumn.h
../../../src/obidmscolumn.c
../../../src/obitypes.h
../../../src/obitypes.c
../../../src/obidmscolumndir.h
../../../src/obidmscolumndir.c
../../../src/obiblob_indexer.h
../../../src/obiblob_indexer.c
../../../src/obiview.h
../../../src/obiview.c
../../../src/hashtable.h
../../../src/hashtable.c
../../../src/linked_list.h
../../../src/linked_list.c
../../../src/obidmscolumn_array.h
../../../src/obidmscolumn_array.c
../../../src/obidmscolumn_blob.h
../../../src/obidmscolumn_blob.c
../../../src/obidmscolumn_idx.h
../../../src/obidmscolumn_idx.c
../../../src/obidmscolumn_bool.h
../../../src/obidmscolumn_bool.c
../../../src/obidmscolumn_char.h
../../../src/obidmscolumn_char.c
../../../src/obidmscolumn_float.h
../../../src/obidmscolumn_float.c
../../../src/obidmscolumn_int.h
../../../src/obidmscolumn_int.c
../../../src/obidmscolumn_qual.h
../../../src/obidmscolumn_qual.c
../../../src/obidmscolumn_seq.h
../../../src/obidmscolumn_seq.c
../../../src/obidmscolumn_str.h
../../../src/obidmscolumn_str.c
../../../src/array_indexer.h
../../../src/array_indexer.c
../../../src/char_str_indexer.h
../../../src/char_str_indexer.c
../../../src/dna_seq_indexer.h
../../../src/dna_seq_indexer.c
../../../src/encode.c
../../../src/encode.h
../../../src/uint8_indexer.c
../../../src/uint8_indexer.h
../../../src/build_reference_db.c
../../../src/build_reference_db.h
../../../src/kmer_similarity.c
../../../src/kmer_similarity.h
../../../src/obi_clean.c
../../../src/obi_clean.h
../../../src/obi_ecopcr.c
../../../src/obi_ecopcr.h
../../../src/obi_ecotag.c
../../../src/obi_ecotag.h
../../../src/obidms_taxonomy.c
../../../src/obidms_taxonomy.h
../../../src/obilittlebigman.c
../../../src/obilittlebigman.h
../../../src/_sse.h
../../../src/obidebug.h
../../../src/libecoPCR/libapat/CODES/dft_code.h
../../../src/libecoPCR/libapat/CODES/dna_code.h
../../../src/libecoPCR/libapat/CODES/prot_code.h
../../../src/libecoPCR/libapat/apat_parse.c
../../../src/libecoPCR/libapat/apat_search.c
../../../src/libecoPCR/libapat/apat.h
../../../src/libecoPCR/libapat/Gmach.h
../../../src/libecoPCR/libapat/Gtypes.h
../../../src/libecoPCR/libapat/libstki.c
../../../src/libecoPCR/libapat/libstki.h
../../../src/libecoPCR/libthermo/nnparams.h
../../../src/libecoPCR/libthermo/nnparams.c
../../../src/libecoPCR/ecoapat.c
../../../src/libecoPCR/ecodna.c
../../../src/libecoPCR/ecoError.c
../../../src/libecoPCR/ecoMalloc.c
../../../src/libecoPCR/ecoPCR.h
../../../src/obi_lcs.h
../../../src/obi_lcs.c
../../../src/obierrno.h
../../../src/obierrno.c
../../../src/upperband.h
../../../src/upperband.c
../../../src/sse_banded_LCS_alignment.h
../../../src/sse_banded_LCS_alignment.c
../../../src/obiblob.h
../../../src/obiblob.c
../../../src/utils.h
../../../src/utils.c
../../../src/obidms.h
../../../src/obidms.c
../../../src/libjson/json_utils.h
../../../src/libjson/json_utils.c
../../../src/libjson/cJSON.h
../../../src/libjson/cJSON.c
../../../src/obiavl.h
../../../src/obiavl.c
../../../src/bloom.h
../../../src/bloom.c
../../../src/crc64.h
../../../src/crc64.c
../../../src/murmurhash2.h
../../../src/murmurhash2.c
../../../src/obidmscolumn.h
../../../src/obidmscolumn.c
../../../src/obitypes.h
../../../src/obitypes.c
../../../src/obidmscolumndir.h
../../../src/obidmscolumndir.c
../../../src/obiblob_indexer.h
../../../src/obiblob_indexer.c
../../../src/obiview.h
../../../src/obiview.c
../../../src/hashtable.h
../../../src/hashtable.c
../../../src/linked_list.h
../../../src/linked_list.c
../../../src/obidmscolumn_array.h
../../../src/obidmscolumn_array.c
../../../src/obidmscolumn_blob.h
../../../src/obidmscolumn_blob.c
../../../src/obidmscolumn_idx.h
../../../src/obidmscolumn_idx.c
../../../src/obidmscolumn_bool.h
../../../src/obidmscolumn_bool.c
../../../src/obidmscolumn_char.h
../../../src/obidmscolumn_char.c
../../../src/obidmscolumn_float.h
../../../src/obidmscolumn_float.c
../../../src/obidmscolumn_int.h
../../../src/obidmscolumn_int.c
../../../src/obidmscolumn_qual.h
../../../src/obidmscolumn_qual.c
../../../src/obidmscolumn_seq.h
../../../src/obidmscolumn_seq.c
../../../src/obidmscolumn_str.h
../../../src/obidmscolumn_str.c
../../../src/array_indexer.h
../../../src/array_indexer.c
../../../src/char_str_indexer.h
../../../src/char_str_indexer.c
../../../src/dna_seq_indexer.h
../../../src/dna_seq_indexer.c
../../../src/encode.c
../../../src/encode.h
../../../src/uint8_indexer.c
../../../src/uint8_indexer.h
../../../src/build_reference_db.c
../../../src/build_reference_db.h
../../../src/kmer_similarity.c
../../../src/kmer_similarity.h
../../../src/obi_clean.c
../../../src/obi_clean.h
../../../src/obi_ecopcr.c
../../../src/obi_ecopcr.h
../../../src/obi_ecotag.c
../../../src/obi_ecotag.h
../../../src/obidms_taxonomy.c
../../../src/obidms_taxonomy.h
../../../src/obilittlebigman.c
../../../src/obilittlebigman.h
../../../src/_sse.h
../../../src/obidebug.h
../../../src/libecoPCR/libapat/CODES/dft_code.h
../../../src/libecoPCR/libapat/CODES/dna_code.h
../../../src/libecoPCR/libapat/CODES/prot_code.h
../../../src/libecoPCR/libapat/apat_parse.c
../../../src/libecoPCR/libapat/apat_search.c
../../../src/libecoPCR/libapat/apat.h
../../../src/libecoPCR/libapat/Gmach.h
../../../src/libecoPCR/libapat/Gtypes.h
../../../src/libecoPCR/libapat/libstki.c
../../../src/libecoPCR/libapat/libstki.h
../../../src/libecoPCR/libthermo/nnparams.h
../../../src/libecoPCR/libthermo/nnparams.c
../../../src/libecoPCR/ecoapat.c
../../../src/libecoPCR/ecodna.c
../../../src/libecoPCR/ecoError.c
../../../src/libecoPCR/ecoMalloc.c
../../../src/libecoPCR/ecoPCR.h
../../../src/obi_lcs.h
../../../src/obi_lcs.c
../../../src/obierrno.h
../../../src/obierrno.c
../../../src/upperband.h
../../../src/upperband.c
../../../src/sse_banded_LCS_alignment.h
../../../src/sse_banded_LCS_alignment.c
../../../src/obiblob.h
../../../src/obiblob.c
../../../src/utils.h
../../../src/utils.c
../../../src/obidms.h
../../../src/obidms.c
../../../src/libjson/json_utils.h
../../../src/libjson/json_utils.c
../../../src/libjson/cJSON.h
../../../src/libjson/cJSON.c
../../../src/obiavl.h
../../../src/obiavl.c
../../../src/bloom.h
../../../src/bloom.c
../../../src/crc64.h
../../../src/crc64.c
../../../src/murmurhash2.h
../../../src/murmurhash2.c
../../../src/obidmscolumn.h
../../../src/obidmscolumn.c
../../../src/obitypes.h
../../../src/obitypes.c
../../../src/obidmscolumndir.h
../../../src/obidmscolumndir.c
../../../src/obiblob_indexer.h
../../../src/obiblob_indexer.c
../../../src/obiview.h
../../../src/obiview.c
../../../src/hashtable.h
../../../src/hashtable.c
../../../src/linked_list.h
../../../src/linked_list.c
../../../src/obidmscolumn_array.h
../../../src/obidmscolumn_array.c
../../../src/obidmscolumn_blob.h
../../../src/obidmscolumn_blob.c
../../../src/obidmscolumn_idx.h
../../../src/obidmscolumn_idx.c
../../../src/obidmscolumn_bool.h
../../../src/obidmscolumn_bool.c
../../../src/obidmscolumn_char.h
../../../src/obidmscolumn_char.c
../../../src/obidmscolumn_float.h
../../../src/obidmscolumn_float.c
../../../src/obidmscolumn_int.h
../../../src/obidmscolumn_int.c
../../../src/obidmscolumn_qual.h
../../../src/obidmscolumn_qual.c
../../../src/obidmscolumn_seq.h
../../../src/obidmscolumn_seq.c
../../../src/obidmscolumn_str.h
../../../src/obidmscolumn_str.c
../../../src/array_indexer.h
../../../src/array_indexer.c
../../../src/char_str_indexer.h
../../../src/char_str_indexer.c
../../../src/dna_seq_indexer.h
../../../src/dna_seq_indexer.c
../../../src/encode.c
../../../src/encode.h
../../../src/uint8_indexer.c
../../../src/uint8_indexer.h
../../../src/build_reference_db.c
../../../src/build_reference_db.h
../../../src/kmer_similarity.c
../../../src/kmer_similarity.h
../../../src/obi_clean.c
../../../src/obi_clean.h
../../../src/obi_ecopcr.c
../../../src/obi_ecopcr.h
../../../src/obi_ecotag.c
../../../src/obi_ecotag.h
../../../src/obidms_taxonomy.c
../../../src/obidms_taxonomy.h
../../../src/obilittlebigman.c
../../../src/obilittlebigman.h
../../../src/_sse.h
../../../src/obidebug.h
../../../src/libecoPCR/libapat/CODES/dft_code.h
../../../src/libecoPCR/libapat/CODES/dna_code.h
../../../src/libecoPCR/libapat/CODES/prot_code.h
../../../src/libecoPCR/libapat/apat_parse.c
../../../src/libecoPCR/libapat/apat_search.c
../../../src/libecoPCR/libapat/apat.h
../../../src/libecoPCR/libapat/Gmach.h
../../../src/libecoPCR/libapat/Gtypes.h
../../../src/libecoPCR/libapat/libstki.c
../../../src/libecoPCR/libapat/libstki.h
../../../src/libecoPCR/libthermo/nnparams.h
../../../src/libecoPCR/libthermo/nnparams.c
../../../src/libecoPCR/ecoapat.c
../../../src/libecoPCR/ecodna.c
../../../src/libecoPCR/ecoError.c
../../../src/libecoPCR/ecoMalloc.c
../../../src/libecoPCR/ecoPCR.h
../../../src/obi_lcs.h
../../../src/obi_lcs.c
../../../src/obierrno.h
../../../src/obierrno.c
../../../src/upperband.h
../../../src/upperband.c
../../../src/sse_banded_LCS_alignment.h
../../../src/sse_banded_LCS_alignment.c
../../../src/obiblob.h
../../../src/obiblob.c
../../../src/utils.h
../../../src/utils.c
../../../src/obidms.h
../../../src/obidms.c
../../../src/libjson/json_utils.h
../../../src/libjson/json_utils.c
../../../src/libjson/cJSON.h
../../../src/libjson/cJSON.c
../../../src/obiavl.h
../../../src/obiavl.c
../../../src/bloom.h
../../../src/bloom.c
../../../src/crc64.h
../../../src/crc64.c
../../../src/murmurhash2.h
../../../src/murmurhash2.c
../../../src/obidmscolumn.h
../../../src/obidmscolumn.c
../../../src/obitypes.h
../../../src/obitypes.c
../../../src/obidmscolumndir.h
../../../src/obidmscolumndir.c
../../../src/obiblob_indexer.h
../../../src/obiblob_indexer.c
../../../src/obiview.h
../../../src/obiview.c
../../../src/hashtable.h
../../../src/hashtable.c
../../../src/linked_list.h
../../../src/linked_list.c
../../../src/obidmscolumn_array.h
../../../src/obidmscolumn_array.c
../../../src/obidmscolumn_blob.h
../../../src/obidmscolumn_blob.c
../../../src/obidmscolumn_idx.h
../../../src/obidmscolumn_idx.c
../../../src/obidmscolumn_bool.h
../../../src/obidmscolumn_bool.c
../../../src/obidmscolumn_char.h
../../../src/obidmscolumn_char.c
../../../src/obidmscolumn_float.h
../../../src/obidmscolumn_float.c
../../../src/obidmscolumn_int.h
../../../src/obidmscolumn_int.c
../../../src/obidmscolumn_qual.h
../../../src/obidmscolumn_qual.c
../../../src/obidmscolumn_seq.h
../../../src/obidmscolumn_seq.c
../../../src/obidmscolumn_str.h
../../../src/obidmscolumn_str.c
../../../src/array_indexer.h
../../../src/array_indexer.c
../../../src/char_str_indexer.h
../../../src/char_str_indexer.c
../../../src/dna_seq_indexer.h
../../../src/dna_seq_indexer.c
../../../src/encode.c
../../../src/encode.h
../../../src/uint8_indexer.c
../../../src/uint8_indexer.h
../../../src/build_reference_db.c
../../../src/build_reference_db.h
../../../src/kmer_similarity.c
../../../src/kmer_similarity.h
../../../src/obi_clean.c
../../../src/obi_clean.h
../../../src/obi_ecopcr.c
../../../src/obi_ecopcr.h
../../../src/obi_ecotag.c
../../../src/obi_ecotag.h
../../../src/obidms_taxonomy.c
../../../src/obidms_taxonomy.h
../../../src/obilittlebigman.c
../../../src/obilittlebigman.h
../../../src/_sse.h
../../../src/obidebug.h
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