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OBITools
OBITools3
Commits
14eca43e
Commit
14eca43e
authored
Mar 26, 2019
by
Eric Coissac
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Import taxo
parent
0b4ea495
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2
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2 changed files
with
13 additions
and
5 deletions
+13
-5
python/obitools3/dms/taxo/taxo.pxd
python/obitools3/dms/taxo/taxo.pxd
+3
-3
python/obitools3/dms/taxo/taxo.pyx
python/obitools3/dms/taxo/taxo.pyx
+10
-2
No files found.
python/obitools3/dms/taxo/taxo.pxd
View file @
14eca43e
#cython: language_level=3
from
.
.capi.obitaxonomy
cimport
ecotx_t
,
OBIDMS_taxonomy_p
from
obitools3.dms
.capi.obitaxonomy
cimport
ecotx_t
,
OBIDMS_taxonomy_p
from
.
.dms
cimport
DMS
from
obitools3.dms
.dms
cimport
DMS
from
.
.object
cimport
OBIWrapper
from
obitools3.dms
.object
cimport
OBIWrapper
cdef
class
Taxonomy
(
OBIWrapper
)
:
...
...
python/obitools3/dms/taxo/taxo.pyx
View file @
14eca43e
#cython: language_level=3
from
obitools3.utils
cimport
str2bytes
,
bytes2str
,
tobytes
,
tostr
from
obitools3.dms.capi.obitaxonomy
cimport
ecotx_t
,
OBIDMS_taxonomy_p
from
..capi.obitaxonomy
cimport
obi_taxonomy_exists
,
\
from
obitools3.dms.dms
cimport
DMS
from
obitools3.dms.dms
import
DMS
from
obitools3.dms.object
cimport
OBIWrapper
from
obitools3.dms.capi.obitaxonomy
cimport
obi_taxonomy_exists
,
\
obi_read_taxonomy
,
\
obi_read_taxdump
,
\
obi_write_taxonomy
,
\
...
...
@@ -15,7 +21,9 @@ from ..capi.obitaxonomy cimport obi_taxonomy_exists, \
obi_taxo_get_genus
,
\
obi_taxo_get_family
,
\
ecotx_t
from
obitools3.dms.capi.obidms
cimport
OBIDMS_p
from
cpython.pycapsule
cimport
PyCapsule_New
,
PyCapsule_GetPointer
import
tarfile
...
...
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