Commit 0eca8610 by Celine Mercier

Pseudo obihead for tests

parent 0de953a3
import sys
import argparse
from obitools3.obidms._obidms import OBIDMS
if __name__ == '__main__':
parser = argparse.ArgumentParser(description='Pseudo obihead.')
parser.add_argument('-V', '--view', dest='view', type=str,
help='Name of the view that should be considered')
parser.add_argument('-N', '--new_view', dest='new_view', type=str,
help='Name of the new view that should be created')
parser.add_argument('-n', '--nb', dest='nb_lines', type=int,
help='Number of lines that should be taken')
args = parser.parse_args()
d = OBIDMS('tdms')
#condition = 1
line_selec = []
v = d.open_view(args.view)
for i in range(0, args.nb_lines) :
line_selec.append(i)
new_v = d.new_view(args.new_view, view_to_clone=v, line_selection=line_selec, view_type="NUC_SEQS_VIEW", comments="obihead "+str(args.nb_lines)+", "+args.view+" to "+args.new_view) #args.key+" "+str(args.comparison)+" "+str(args.value)+" "+)
print("\n")
print(new_v.__repr__())
v.save_and_close()
new_v.save_and_close()
d.close()
print("\nDone.")
\ No newline at end of file
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