... | @@ -119,15 +119,15 @@ Otherwise, to build the database yourself from the start: |
... | @@ -119,15 +119,15 @@ Otherwise, to build the database yourself from the start: |
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obi import --embl EMBL wolf/embl_refs
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obi import --embl EMBL wolf/embl_refs
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For EMBL files, you can give the path to a directory with several EMBL files.
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For EMBL files, you can give the path to a directory with several EMBL files.
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**Note:** The reference database can be built in another DMS.
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**Note:** The reference database can be built in another DMS.
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3. Download the taxonomy:
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3. Download the taxonomy:
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wget https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz
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wget https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz
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Check the md5, as files downloaded from the NCBI are often corrupted on some networks. Compare https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz.md5 with:
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Check the md5 sum, as files downloaded from the NCBI are often corrupted on some networks. Compare https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz.md5 with:
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md5sum taxdump.tar.gz
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md5sum taxdump.tar.gz
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... | | ... | |