... | ... | @@ -112,14 +112,15 @@ Otherwise, to build the database yourself from the start: |
|
|
|
|
|
mkdir EMBL
|
|
|
cd EMBL
|
|
|
wget -nH --cut-dirs=5 -A rel_std_*.dat.gz -R rel_std_hum_*.dat.gz,rel_std_env_*.dat.gz -m ftp://ftp.ebi.ac.uk/pub/databases/embl/release/std/
|
|
|
wget -nH --cut-dirs=6 -A 'STD_*.dat.gz' -R 'STD_HUM*.dat.gz','STD_ENV*.dat.gz' -m -np ftp://ftp.ebi.ac.uk/pub/databases/ena/sequence/snapshot_latest/std/
|
|
|
|
|
|
cd ..
|
|
|
|
|
|
2. Import the sequences in the DMS:
|
|
|
|
|
|
obi import --embl EMBL wolf/embl_refs
|
|
|
|
|
|
For EMBL files, you can give the path to a directory with several EMBL files.
|
|
|
For EMBL files, you can give the path to a directory with several EMBL files. Same with GenBank files.
|
|
|
|
|
|
**Note:** The reference database can be built in another DMS.
|
|
|
|
... | ... | |