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  • Wolf tutorial with the OBITools3

Wolf tutorial with the OBITools3 · Changes

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Update Wolf tutorial with the OBITools3 authored May 05, 2020 by Celine Mercier's avatar Celine Mercier
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Wolf-tutorial-with-the-OBITools3.md
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...@@ -140,7 +140,7 @@ For EMBL files, you can give the path to a directory with several EMBL files. ...@@ -140,7 +140,7 @@ For EMBL files, you can give the path to a directory with several EMBL files.
obi grep --require-rank=family --taxonomy wolf/taxonomy/my_tax wolf/v05_refs_uniq wolf/v05_refs_uniq_clean obi grep --require-rank=family --taxonomy wolf/taxonomy/my_tax wolf/v05_refs_uniq wolf/v05_refs_uniq_clean
4. Build the reference database specifically used by the OBITools3 to make ecotag efficient: 4. Build the reference database specifically used by the OBITools3 to make ecotag efficient by pre-computing the similarities between the reference sequences:
obi build_ref_db -t 0.97 --taxonomy wolf/taxonomy/my_tax wolf/v05_refs_uniq_clean wolf/v05_db_97 obi build_ref_db -t 0.97 --taxonomy wolf/taxonomy/my_tax wolf/v05_refs_uniq_clean wolf/v05_db_97
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  • Installing the OBITools3
  • The OBITools3 data structure
  • The OBITools3 syntax
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  • Wolf tutorial with the OBITools3
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