... | @@ -126,7 +126,11 @@ For EMBL files, you can give the path to a directory with several EMBL files. |
... | @@ -126,7 +126,11 @@ For EMBL files, you can give the path to a directory with several EMBL files. |
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3. Download the taxonomy:
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3. Download the taxonomy:
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wget https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz
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wget https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz
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Check the md5, as files downloaded from the NCBI are often corrupted on some networks. Compare https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz.md5 with:
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md5sum taxdump.tar.gz
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4. Import the taxonomy in the DMS:
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4. Import the taxonomy in the DMS:
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obi import --taxdump taxdump.tar.gz wolf/taxonomy/my_tax
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obi import --taxdump taxdump.tar.gz wolf/taxonomy/my_tax
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... | | ... | |