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Wolf tutorial with the OBITools3 · Changes

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Update Wolf tutorial with the OBITools3 authored May 05, 2020 by Celine Mercier's avatar Celine Mercier
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Wolf-tutorial-with-the-OBITools3.md
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......@@ -131,11 +131,11 @@ For EMBL files, you can give the path to a directory with several EMBL files.
obi grep --require-rank=species --require-rank=genus --require-rank=family --taxonomy wolf/taxonomy/my_tax wolf/v05_refs wolf/v05_refs_clean
2. Dereplicate identical sequences:
2. Dereplicate identical sequences (note: not a necessary step, avoid for big databases as long as #79 is not fixed):
obi uniq --taxonomy wolf/taxonomy/my_tax wolf/v05_refs_clean wolf/v05_refs_uniq
3. Ensure that the dereplicated sequences have a taxid at the family level:
3. Ensure that the dereplicated sequences have a taxid at the family level (if you ran the previous step):
obi grep --require-rank=family --taxonomy wolf/taxonomy/my_tax wolf/v05_refs_uniq wolf/v05_refs_uniq_clean
......
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