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### Current version: `3.0.0b37`
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### Current version: `3.0.0b38`
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You can check the version installed by running `obi --version`
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You can check the version installed by running `obi --version`
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| ... | @@ -21,13 +21,16 @@ python3 setup.py install |
... | @@ -21,13 +21,16 @@ python3 setup.py install |
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### Release notes:
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### Release notes:
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* `3.0.0b38`:
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- `grep`: fixed `--id-list` option
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* `3.0.0b37`:
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* `3.0.0b37`:
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- `import`: can now import SILVA fasta files, and now handling sequences with Uracil (U) nucleotides (by converting them to Thymine (T) for now)
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- `import`: can now import SILVA fasta files, and now handling sequences with Uracil (U) nucleotides (by converting them to Thymine (T) for now)
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- `addtaxids`: new command to annotate sequences with their NCBI taxid based on their taxon name
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- `addtaxids`: new command to annotate sequences with their NCBI taxid based on their taxon name
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* `3.0.0b36`:
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* `3.0.0b36`:
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- `obi ls`: reworked a bit (mostly just now done in C instead of Cython)
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- `ls`: reworked a bit (mostly just now done in C instead of Cython)
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* `3.0.0b35`:
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* `3.0.0b35`:
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- `ecotag`: added separate threshold for minimum circle identity (sequence is assigned to the LCA of all sequences within a similarity circle of the best matches; the threshold for this circle is the highest value between the chosen minimum circle identity and the best assignment score found for the query sequence)
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- `ecotag`: added separate threshold for minimum circle identity (sequence is assigned to the LCA of all sequences within a similarity circle of the best matches; the threshold for this circle is the highest value between the chosen minimum circle identity and the best assignment score found for the query sequence)
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