| ... | ... | @@ -24,69 +24,86 @@ python3 setup.py install |
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* `3.0.1b17`:
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- `import`: added import of UNITE fasta format
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* `3.0.1b16`:
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- `annotate`: fixed a bug where a column type could be wrongly guessed
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* `3.0.1b15`:
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- `split`: new command
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* `3.0.1b14`:
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- `export`: added options to export to metabaR compatible format
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- Various minor fixes and improvements
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* `3.0.1b13`:
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- `import`: more lenient handling of white spaces for genbank files
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* `3.0.1b12`:
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- `ecopcr`: now accepting taxonomy from a different DMS than the reference sequences
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- Various minor fixes and improvements
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* `3.0.1b11`:
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- `export`: integer missing values now imported as '0' for tabular format ; header now printed by default for tabular format ; and added option to only export specific keys/columns
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- Various minor fixes and improvements
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* `3.0.1b10`:
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- `import`: fixed a parsing issue with some GenBank files
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* `3.0.1b9`:
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- `import`: now imports and adds NCBI taxids for SILVA and RDP training set fasta files
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- various minor fixes and improvements
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* `3.0.1b8`:
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- `ecotag`: 'BEST_MATCH_TAXIDS' now dereplicated (no repeated taxids in the
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list)
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* `3.0.1b7`:
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- `alignpairedend`: fixed bug that would cut out sequence ends when it should not have
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* `3.0.1b6`:
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- Now handling large int values (`import` rewrites column in OBI_FLOAT if a value is > INT32_MAX)
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- Fixed a bug where some taxids could not be retrieved
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- `import`/`export`: fixed issue where the '\t' separator option was not read properly
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- `stats`: improved the tabular display to be properly read by R
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* `3.0.1b5`:
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- `obi rm`: new command to delete any view (for now the user deleting a view
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accepts that there will be missing information when running `obi history`
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if other views descend from the deleted view)
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* `3.0.1b4`:
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- `ngsfilter`: fixed critical bug where barcodes shorter than the forward primer would be missed
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- `import`: fixed the import of tabular files with no header
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<br>
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* `3.0.1b3`:
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- `uniq`: now OK to use *-m* option even if only one unique key in information to merge (e.g. one sample)
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<br>
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* `3.0.1b2`:
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- Made the OBITools3 more 'empty file friendly'
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<br>
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* `3.0.1b1`:
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- The OBITools3 now work on the Windows Subsystem for Linux
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<br>
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* `3.0.0b43`:
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- Dictionaries with one key are now handled
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<br>
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* `3.0.0b42`:
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- `import`: improved Genbank file parser
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