Commits · f03928c679ad13f6e80a2da48e2e12ec4028f3e8 · OBITools / OBITools3

06 Jul, 2017 1 commit
- Committing minor comments before merging branch with master · f03928c6
  Celine Mercier authored Jul 06, 2017
  
  f03928c6
05 Jul, 2017 16 commits
- Commented a loose print · 717ee46f
  Celine Mercier authored Jul 05, 2017
  
  717ee46f
- Better *Seq* classes but still need work · 313508cc
  Celine Mercier authored Jul 05, 2017
  
  313508cc
- Column rewriter and optimized View getter · 535fc2af
  Celine Mercier authored Jul 05, 2017
  
  535fc2af
- More optimized Column item getter · 3bbc2ae4
  Celine Mercier authored Jul 05, 2017
  
  3bbc2ae4
- Cython API: set_line of Column_multi_elts now accept as values argument · 5ee0b398
  Celine Mercier authored Jul 05, 2017
```
any class where values are referenced by keys with an iterator
```
  5ee0b398
- C functions to detect IUPAC sequences · d10192ab
  Celine Mercier authored Jul 05, 2017
  
  d10192ab
- New obi import with rewriting of columns when column type or line · 101f764c
  Celine Mercier authored Jul 05, 2017
```
elements (keys) change
```
  101f764c
- Added functions to try to open a DMS if it exists · cb5ad2ed
  Celine Mercier authored Jul 05, 2017
  
  cb5ad2ed
- Added a check on the element when setting a value in a column · f5e992ab
  Celine Mercier authored Jul 05, 2017
  
  f5e992ab
- Better handling and tracing of Index Errors between C and Cython · 1d2996c6
  Celine Mercier authored Jul 05, 2017
  
  1d2996c6
- Removed deprecated declarations · f6631f38
  Celine Mercier authored Jul 05, 2017
  
  f6631f38
- obi test: minor changes · 3f5fef10
  Celine Mercier authored Jul 05, 2017
  
  3f5fef10
- Basic obi check command to check DMS and view informations · 20c72af6
  Celine Mercier authored Jul 05, 2017
  
  20c72af6
- Basic obi less command · d2521319
  Celine Mercier authored Jul 05, 2017
  
  d2521319
- Basic obi grep with new Cython API · ca16ce0b
  Celine Mercier authored Jul 05, 2017
  
  ca16ce0b
- Removed unused import · ac94b353
  Celine Mercier authored Jul 05, 2017
  
  ac94b353
21 Apr, 2017 6 commits
- Goes with c2af955b : forgotten files for NUC_SEQS views · 2d65db4e
  Celine Mercier authored Apr 21, 2017
  
  2d65db4e
- Updated obi test to test NUC_SEQS views and the taxonomy API · 4b037ae2
  Celine Mercier authored Apr 21, 2017
  
  4b037ae2
- Cython view API: added NUC_SEQS views and sequence classes + changed · c2af955b
  Celine Mercier authored Apr 21, 2017
```
cloning API
```
  c2af955b
- Added functions to clone views with a simpler API · 71b1a43d
  Celine Mercier authored Apr 21, 2017
  
  71b1a43d
- Reworked taxonomy Cython API to be a subclass of OBIWrapper · 1725b8b8
  Celine Mercier authored Apr 21, 2017
  
  1725b8b8
- Cython API: removed unnecessary imports · ab0d0829
  Celine Mercier authored Apr 21, 2017
  
  ab0d0829
14 Apr, 2017 7 commits
- Fixed a problem where a view would have a wrong line count after adding · 2f0c4b90
  Celine Mercier authored Apr 14, 2017
```
a first column to it if there was already a Line selection associated
(happening when cloning), and fixed a bad error check.
```
  2f0c4b90
- Minor C doc clarification · 537b9847
  Celine Mercier authored Apr 14, 2017
  
  537b9847
- Cython API: updated the test command for the new API and deactivated the · b998373b
  Celine Mercier authored Apr 14, 2017
```
other commands for now
```
  b998373b
- Cython API: added taxonomy API · 6f780148
  Celine Mercier authored Apr 14, 2017
  
  6f780148
- Cython API: fixed bug when deleting a column from a view where the · 0e08fc48
  Celine Mercier authored Apr 14, 2017
```
Cython wrapper wasn't closed, and fixed the Line selection
materialization
```
  0e08fc48
- Cython API: fixed problems with Column class · 2bbee64e
  Celine Mercier authored Apr 14, 2017
  
  2bbee64e
- Cython API: fixed conversion bugs when setting and getting values · 693859ee
  Celine Mercier authored Apr 14, 2017
```
(especially NA values) in OBI_CHAR, OBI_STR and OBI_SEQ columns
```
  693859ee
06 Apr, 2017 10 commits
- Cython API: automatic importing of column classes now works · a3fad271
  Celine Mercier authored Apr 06, 2017
  
  a3fad271
- Merge branch 'Eric_new_Python_API' of... · f351540b
  Celine Mercier authored Apr 06, 2017
```
Merge branch 'Eric_new_Python_API' of git@git.metabarcoding.org:obitools/obitools3.git into Eric_new_Python_API
```
  f351540b
- Patch the registering function : register_all_column_classes · 6dccaa02
  Eric Coissac authored Apr 06, 2017
  
  6dccaa02
- Cython API: now using const char* instead of char* for the type of · 5de9e0de
  Celine Mercier authored Apr 06, 2017
```
values read from OBI_STR columns
```
  5de9e0de
- Views: better checks when adding an existing column to a view · ad8de803
  Celine Mercier authored Apr 06, 2017
  
  ad8de803
- Cython Column API · 8cd3e360
  Celine Mercier authored Apr 06, 2017
  
  8cd3e360
- Cython View API · 255f3c92
  Celine Mercier authored Apr 06, 2017
  
  255f3c92
- Cython Object API · 08be4e23
  Celine Mercier authored Apr 06, 2017
  
  08be4e23
- new Cython DMS API · b5b79954
  Celine Mercier authored Apr 06, 2017
  
  b5b79954
- Cython typed columns · 0dfb1eb3
  Celine Mercier authored Apr 06, 2017
  
  0dfb1eb3