Commits · cd4e65e19075b02c1940bf91ea38d3d40740a39f · OBITools / OBITools3

12 Apr, 2016 2 commits
- Fixed typo and includes in obiblob files · cd4e65e1
  Celine Mercier authored Apr 12, 2016
  
  cd4e65e1
- Renamed "Obi_byte_arrays" to "Obiblobs" and moved Obiblob functions to · 375bfcce
  Celine Mercier authored Apr 12, 2016
```
separate obiblob.c and obiblob.h files
```
  375bfcce
11 Apr, 2016 2 commits
- Fixed bug with retrieval of values from AVLs (bad cast in byte array · c225cfd8
  Celine Mercier authored Apr 11, 2016
```
structure)
```
  c225cfd8
- Deleted declaration of obsolete public function · 966b1325
  Celine Mercier authored Apr 11, 2016
  
  966b1325
08 Apr, 2016 1 commit
- Branch to refactor and debug (AVLs bugged) · 019dfc01
  Celine Mercier authored Apr 08, 2016
  
  019dfc01
25 Mar, 2016 2 commits
- Fixed minor warning · edc4fd7b
  Celine Mercier authored Mar 25, 2016
  
  edc4fd7b
- Implemented the retrieval of values with groups of AVLs · ff6c27ac
  Celine Mercier authored Mar 25, 2016
  
  ff6c27ac
24 Mar, 2016 1 commit
- untested (and no possible retrieval) of CRC used to represent data in · 69856f18
  Celine Mercier authored Mar 24, 2016
```
AVL trees
```
  69856f18
23 Mar, 2016 3 commits
- Added macro for the bloom filter parameters and deleted old unused · 58ac860c
  Celine Mercier authored Mar 23, 2016
```
macros for crc
```
  58ac860c
- obiimport function for testing purposes · d44117d6
  Celine Mercier authored Mar 23, 2016
  
  d44117d6
- Minor fixes to silence warnings and replaced two asprintf uses · 6bd42132
  Celine Mercier authored Mar 23, 2016
  
  6bd42132
22 Mar, 2016 1 commit
- Merge branch 'multiple_avls_bloom' · 40859043
  Celine Mercier authored Mar 22, 2016
  
  40859043
21 Mar, 2016 1 commit
- made POSIX compliant · b04b4b59
  Celine Mercier authored Mar 21, 2016
  
  b04b4b59
18 Mar, 2016 2 commits
- Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git · 383e738a
  Celine Mercier authored Mar 18, 2016
  
  383e738a
- Multiple AVLs with bloom filters (very raw test version) · 3681cecb
  Celine Mercier authored Mar 18, 2016
  
  3681cecb
11 Mar, 2016 3 commits
- Code for tests storing data in multiple AVLs. · 545ed811
  Celine Mercier authored Mar 11, 2016
```
(note: unretrievable data as implemented)
```
  545ed811
- Minor improvement in AVL initial size calculation · 86071d30
  Celine Mercier authored Mar 11, 2016
  
  86071d30
- First implementation of taxonomy reading · 21d1b2ed
  Celine Mercier authored Mar 11, 2016
  
  21d1b2ed
08 Mar, 2016 1 commit
- prototype for the obi unix command and the count sub command · 61576331
  Eric Coissac authored Mar 08, 2016
  
  61576331
01 Mar, 2016 1 commit
- It is now impossible to create a view with a name identical to one of an · a08def47
  Celine Mercier authored Mar 01, 2016
```
existing written view
```
  a08def47
29 Feb, 2016 4 commits
- Closes #34 · fc5a12ba
  Celine Mercier authored Feb 29, 2016
  
  fc5a12ba
- Cython classes for nucleotide sequences (outside or in the context of a · e323d8e7
  Celine Mercier authored Feb 29, 2016
```
view)
```
  e323d8e7
- Fixed minor error · b350ea03
  Celine Mercier authored Feb 29, 2016
  
  b350ea03
- Increased the maximum depth of AVL trees · 8e9e21a0
  Celine Mercier authored Feb 29, 2016
  
  8e9e21a0
25 Feb, 2016 1 commit
- Added Obiviews specialized for the handling of nucleotide sequences · 4df313c5
  Celine Mercier authored Feb 25, 2016
  
  4df313c5
18 Feb, 2016 2 commits
- Deleted a forgotten print statement · ffc68d44
  Celine Mercier authored Feb 18, 2016
  
  ffc68d44
- Major update : views · a8f03248
  Celine Mercier authored Feb 18, 2016
  
  a8f03248
11 Dec, 2015 3 commits
- Fixed more typos and formatting imperfections. · cfaf0690
  Celine Mercier authored Dec 11, 2015
  
  cfaf0690
- Fixed typos · a6144eab
  Celine Mercier authored Dec 11, 2015
  
  a6144eab
- DNA sequences and character strings are now handled using AVL trees. · c1393675
  Celine Mercier authored Dec 11, 2015
  
  c1393675
02 Dec, 2015 1 commit

Added the lists of opened columns and arrays in the OBIDMS structure, · 1586956d

Celine Mercier authored Dec 02, 2015

and a counter in the OBIDMS column structure; fixed some bugs and
created tests for referring columns that are bound to disappear anyway.

1586956d

29 Nov, 2015 1 commit
- Major update: new type of columns containing indices referring to lines · b45b496b
  Celine Mercier authored Nov 29, 2015
```
in other columns
```
  b45b496b
23 Nov, 2015 4 commits
- Column type is now passed as a character string when creating the column · 2cf10cb6
  Celine Mercier authored Nov 23, 2015
```
(either 'OBI_INT', 'OBI_FLOAT', 'OBI_BOOL', 'OBI_CHAR', 'OBI_STR' or
'OBI_SEQ')
```
  2cf10cb6
- deleting useless .pyc files · 5a551630
  Celine Mercier authored Nov 23, 2015
  
  5a551630
- Fixed a major bug with the versioning of columns that was introduced in · d6a99baf
  Celine Mercier authored Nov 23, 2015
```
f6ec8ba9
```
  d6a99baf
- Increased maximum line count of columns to 1^9 · 08f2657e
  Celine Mercier authored Nov 23, 2015
  
  08f2657e
20 Nov, 2015 2 commits
- DNA sequences are now encoded on 4 bits when they are in IUPAC · 6aa2f929
  Celine Mercier authored Nov 20, 2015
  
  6aa2f929
- modified the encoding function on 2 bits a little · 87044b41
  Celine Mercier authored Nov 20, 2015
  
  87044b41
19 Nov, 2015 2 commits
- New column type for DNA sequences. Only for those coded on 2 bits (only · 6ab1c833
  Celine Mercier authored Nov 19, 2015
```
'ATGCatgc') for now.
```
  6ab1c833
- changed version to 0.0.0 · e3712485
  Celine Mercier authored Nov 19, 2015
  
  e3712485