Commits · b371030edd389691ef704200018f5c4cbec966ac · OBITools / OBITools3 · GitLab

29 Apr, 2016 1 commit
- Adding README file · b371030e
  Celine Mercier authored Apr 29, 2016
  
  b371030e
28 Apr, 2016 2 commits
- Merge branch 'luke_tests' · b3976fa4
  Celine Mercier authored Apr 28, 2016
  
  b3976fa4
- Merging luke_tests branch without the commit turning inline functions in macros · 6ea2cfb9
  Celine Mercier authored Apr 28, 2016
  
  6ea2cfb9
27 Apr, 2016 8 commits
- Pseudo obihead for tests · 0eca8610
  Celine Mercier authored Apr 27, 2016
  
  0eca8610
- pseudo obigrep for tests · 0de953a3
  Celine Mercier authored Apr 27, 2016
  
  0de953a3
- Fixed bug with indexer names being defined and generating seg fault if · f3b20b80
  Celine Mercier authored Apr 27, 2016
```
creating a column not using indexers
```
  f3b20b80
- Fixed obi import trying to print all lines at the end (source of · d159b921
  Celine Mercier authored Apr 27, 2016
```
segfault?)
```
  d159b921
- Added all C files as source files for all cython files to stop having · 4e4cf46b
  Celine Mercier authored Apr 27, 2016
```
that kind of problem with linux systems
```
  4e4cf46b
- Added more C source files for _obiseq · 6b615336
  Celine Mercier authored Apr 27, 2016
  
  6b615336
- Added files in _obitaxo C sources for cython · 41988548
  Celine Mercier authored Apr 27, 2016
  
  41988548
- Commented #ifdef directive for detect_bucket_size function because it · 0c8504b6
  Celine Mercier authored Apr 27, 2016
```
causes errors
```
  0c8504b6
26 Apr, 2016 5 commits
- changed inline functions to macros to make it work on Luke · 654c34a1
  Celine Mercier celine.mercier@ujf-grenoble.fr authored Apr 26, 2016
  
  654c34a1
- Fixed variable initialization for error detection · 2d8c06f7
  Celine Mercier authored Apr 26, 2016
  
  2d8c06f7
- import command a bit modified for tests · a6c8d354
  Celine Mercier authored Apr 26, 2016
  
  a6c8d354
- Renamed MurmurHash2.c file to murmurhash2.c as it could be a problem · 36626482
  Celine Mercier authored Apr 26, 2016
  
  36626482
- Removed deprecated code · d3a6ff60
  Celine Mercier authored Apr 26, 2016
  
  d3a6ff60
25 Apr, 2016 11 commits
- Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git · 5ca84b91
  Celine Mercier authored Apr 25, 2016
  
  5ca84b91
- Fixed all compilation problems with new function names, locations etc · 87935c66
  Celine Mercier authored Apr 25, 2016
  
  87935c66
- Made the function to clone a column in the context of a view private · 92980508
  Celine Mercier authored Apr 25, 2016
  
  92980508
- Made function to update the line count of a view private · 65880db4
  Celine Mercier authored Apr 25, 2016
  
  65880db4
- Reordered view functions for better coherence · 767d9c78
  Celine Mercier authored Apr 25, 2016
  
  767d9c78
- Updated the documentation for utils functions · 2566377e
  Celine Mercier authored Apr 25, 2016
  
  2566377e
- Updated obiversion_t declaration · 1fbbdd43
  Celine Mercier authored Apr 25, 2016
  
  1fbbdd43
- Documentation for views and reworked the code a little · 8cdfbb37
  Celine Mercier authored Apr 25, 2016
  
  8cdfbb37
- Reworked obiview code and added more comments · 0a55e265
  Celine Mercier authored Apr 25, 2016
  
  0a55e265
- Updated documentation in obitypes.h · 68a8509c
  Celine Mercier authored Apr 25, 2016
  
  68a8509c
- Fixed the calculation of the size of data for OBI_STR and OBI_SEQ · 5f98d2ed
  Celine Mercier authored Apr 25, 2016
```
columns
```
  5f98d2ed
23 Apr, 2016 2 commits
- Update Licence to english version · ef1be141
  Eric Coissac authored Apr 23, 2016
  
  ef1be141
- Add license · bbfd40d5
  Eric Coissac authored Apr 23, 2016
  
  bbfd40d5
22 Apr, 2016 11 commits
- Updated the documentation in obidmscolumn.h · 5d08da46
  Celine Mercier authored Apr 22, 2016
  
  5d08da46
- Creating a column now uses the function to create the indexer name if · 66045acf
  Celine Mercier authored Apr 22, 2016
```
one was not provided
```
  66045acf
- Improved function to build an indexer name · 6977c431
  Celine Mercier authored Apr 22, 2016
  
  6977c431
- Added a function to build indexer names · 839b3000
  Celine Mercier authored Apr 22, 2016
  
  839b3000
- changed MAP_PRIVATE flags to MAP_SHARED when opening a column because it · ffa45579
  Celine Mercier authored Apr 22, 2016
```
seems a lot more efficient
```
  ffa45579
- Fixed initialization of NA values for OBI_STR and OBI_SEQ columns · 003cd113
  Celine Mercier authored Apr 22, 2016
  
  003cd113
- Uncommented an error message that doesn't need to be commented anymore · c87227b6
  Celine Mercier authored Apr 22, 2016
  
  c87227b6
- Updated the documentation for OBI_STR columns · c07e75f2
  Celine Mercier authored Apr 22, 2016
  
  c07e75f2
- Updated the documentation for OBI_SEQ columns · 6b394a5c
  Celine Mercier authored Apr 22, 2016
  
  6b394a5c
- Deleted more unused inclusions in OBI_STR and OBI_SEQ column types code · 2416b8cc
  Celine Mercier authored Apr 22, 2016
  
  2416b8cc
- Removed unused inclusions and definitions in all column types code · b9921e11
  Celine Mercier authored Apr 22, 2016
  
  b9921e11