Commits · a04588da31d962515ce827ec2ad8dd1ceef52efd · OBITools / OBITools3

24 May, 2019 1 commit
- openmp on j loop (i loop probably better) · a04588da
  Celine Mercier authored May 24, 2019
  
  a04588da
22 May, 2019 1 commit
- CMake: setting compiler higher to avoid conflicts, and linking libopenmp · ed5bb70c
  Celine Mercier authored May 22, 2019
  
  ed5bb70c
19 May, 2019 1 commit
- obi clean: not using tsearch library anymore, a simple byte array · 22a5ae72
  Celine Mercier authored May 19, 2019
```
instead. A lot more time and memory efficient. Closes #67
```
  22a5ae72
12 Apr, 2019 2 commits
- Add a --cobitools3 options to setup.py · dc88181e
  Eric Coissac authored Apr 12, 2019
  
  dc88181e
- Comment the install of the packages · 2f60e91d
  Eric Coissac authored Apr 12, 2019
  
  2f60e91d
01 Apr, 2019 3 commits
- Ask for python 3.7 · 7ba27b6a
  Eric Coissac authored Apr 01, 2019
  
  7ba27b6a
- Add the cmakefile to the manifest · d3937e10
  Eric Coissac authored Apr 01, 2019
  
  d3937e10
- Build the C src in build/cobject · 35eeb07f
  Eric Coissac authored Apr 01, 2019
  
  35eeb07f
31 Mar, 2019 11 commits
- CMake: made required version 3.10 for ubuntu · 3afbbeb7
  Celine Mercier authored Mar 31, 2019
  
  3afbbeb7
- dirty temporary fix for install · d6056a8e
  Celine Mercier authored Mar 31, 2019
  
  d6056a8e
- history: fixed DMS history when multiple inputs · ac47bdce
  Celine Mercier authored Mar 31, 2019
  
  ac47bdce
- C: obi lcs: cleaner progress print · 7f8d1e71
  Celine Mercier authored Mar 31, 2019
  
  7f8d1e71
- ngsfilter: fixed parsing error · 80068a3c
  Celine Mercier authored Mar 31, 2019
  
  80068a3c
- obi import: fixed import of View_NUC_SEQS to another DMS · a3e6b7d9
  Celine Mercier authored Mar 31, 2019
  
  a3e6b7d9
- Cython: made fasta formatter cleaner · 416c2d7b
  Celine Mercier authored Mar 31, 2019
  
  416c2d7b
- C: made build_ref_db cleaner · 26fb149e
  Celine Mercier authored Mar 31, 2019
  
  26fb149e
- Cython: added possibility to output in tabular format · 2b8c066f
  Celine Mercier authored Mar 31, 2019
  
  2b8c066f
- Cython: added tab formatter and parser (for obi export) · e39c1a7f
  Celine Mercier authored Mar 31, 2019
  
  e39c1a7f
- obi history: fixed a bug when displaying ascii history · 6841d879
  Celine Mercier authored Mar 31, 2019
  
  6841d879
30 Mar, 2019 10 commits
- Removing trace · f0ff5854
  Celine Mercier authored Mar 30, 2019
  
  f0ff5854
- obi uniq: various fixes... · 601a2cfd
  Celine Mercier authored Mar 30, 2019
  
  601a2cfd
- C: Views: fixed a bug when creating automatic columns with unformatted · 7c518300
  Celine Mercier authored Mar 30, 2019
```
comments
```
  7c518300
- obi grep: fixed a bug where -p option didn't work · f16bbca8
  Celine Mercier authored Mar 30, 2019
  
  f16bbca8
- Merge commit '3d842ff7' · 17348344
  Celine Mercier authored Mar 30, 2019
  
  17348344
- C: taxonomy: fixed a segfault on linux when trying to fclose an unopened · 52b3a9fc
  Celine Mercier authored Mar 30, 2019
```
file
```
  52b3a9fc
- obi import: progress bar fixed when using --only option · ce686e95
  Celine Mercier authored Mar 30, 2019
  
  ce686e95
- Python: embl parser: fixed a bug preventing taxids from being parsed · c293cfab
  Celine Mercier authored Mar 30, 2019
  
  c293cfab
- fixed typo · 0847d618
  Celine Mercier authored Mar 30, 2019
  
  0847d618
- C: build_reference_db: made some errors more explicit · 9fcebd76
  Celine Mercier authored Mar 30, 2019
  
  9fcebd76
29 Mar, 2019 11 commits
- Clean the manifest of old files · 5d842ff7
  Eric Coissac authored Mar 29, 2019
  
  5d842ff7
- remove all the no more needed .cfiles · 34455792
  Eric Coissac authored Mar 29, 2019
  
  34455792
- Add the new script emplacement · 995a66b4
  Eric Coissac authored Mar 29, 2019
  
  995a66b4
- cleaning stage 2 · 5007b02c
  Eric Coissac authored Mar 29, 2019
  
  5007b02c
- Cleaning first stage · cdd5975e
  Eric Coissac authored Mar 29, 2019
  
  cdd5975e
- Merge branch 'pip-standard-orig-python' into 'master' · 0c466046
  Eric Coissac authored Mar 29, 2019
```
The new install version based on classical setup.py

See merge request !1
```
  0c466046
- Patch the way of installing the obi main command · 27744222
  Eric Coissac authored Mar 29, 2019
  
  27744222
- Add some .ignore files · bf62960e
  Eric Coissac authored Mar 29, 2019
  
  bf62960e
- Move and rename the obi.py script · 9c41b1e9
  Eric Coissac authored Mar 29, 2019
  
  9c41b1e9
- remove the old distutils · 3a6d1be7
  Eric Coissac authored Mar 29, 2019
  
  3a6d1be7
- Switch back to the original python source from the paster branch · 6c529660
  Eric Coissac authored Mar 29, 2019
  
  6c529660