GitLab

tested)

pointers instead of column pointers.

git@git.metabarcoding.org:obitools/obitools3.git into
Eric_new_Python_API

Conflicts:
	python/obitools3/obidms/_obidms.pxd
	python/obitools3/obidms/_obidms.pyx
	python/obitools3/obidms/_obidmscolumn_bool.pyx
	python/obitools3/obidms/_obidmscolumn_str.pyx
	python/obitools3/obidms/_obiseq.pxd
	python/obitools3/obidms/_obiseq.pyx
	python/obitools3/obidms/_obitaxo.pxd
	python/obitools3/obidms/_obitaxo.pyx
	python/obitools3/obidms/_obiview.pxd
	python/obitools3/obidms/_obiview.pyx
	python/obitools3/obidms/_obiview_nuc_seq.pxd
	python/obitools3/obidms/_obiview_nuc_seq.pyx
	python/obitools3/obidms/_obiview_nuc_seq_qual.pxd
	python/obitools3/obidms/_obiview_nuc_seq_qual.pyx
	python/obitools3/obidms/capi/obialign.pxd
	python/obitools3/obidms/capi/obidmscolumn.pxd
	python/obitools3/obidms/capi/obitaxonomy.pxd
	python/obitools3/obidms/capi/obiview.pxd

'.obiview_unfinished', renamed to '.obiview' when the view is finished.

now formatted with '\0' as separator and handled in a more optimized way

closing the taxonomy (overwriting of .pdx files, missing freeing, and
re-placed a misplaced condition)

function names, and fixed a bug with taxa indices not being properly
initialized

Merge branch 'Eric_new_Python_API' of git@git.metabarcoding.org:obitools/obitools3.git into Eric_new_Python_API

delnodes.dmp file and added to *.adx file

and current taxids and their corresponding indices in the taxa
structure) and to find the taxa using the merged index.

a 16 bits integer can code for (as the LCS and alignment lengths are
kept in 16 bits registers)

deactivated for now because can't make it compile with cython/clang