Commits · 6a8df069ad4908a3d77034785b490a4f3af96453 · OBITools / OBITools3

18 May, 2016 1 commit

Indexers are now cloned if needed to modify them after they've been · 6a8df069

Celine Mercier authored May 18, 2016

closed. Obligatory indexers' names now follow the same pattern as other
indexers (columnname_version). Closes #46 and #49.

6a8df069

11 May, 2016 3 commits
- First version of quality handling (not working yet) and now it is · 8ae76449
  Celine Mercier authored May 11, 2016
```
checked that a column is writable before enlarging it
```
  8ae76449
- First version of alignment functions (imported from suma* programs) · b3c47809
  Celine Mercier authored May 11, 2016
  
  b3c47809
- Now when a column is added to a view, if there is a line selection, all · 35676813
  Celine Mercier authored May 11, 2016
```
columns in the view are cloned first
```
  35676813
29 Apr, 2016 3 commits
- Relative paths when creating or opening a DMS now work · a32920e4
  Celine Mercier authored Apr 29, 2016
  
  a32920e4
- Added indexer function that returns the name of the indexer · 31cf27d6
  Celine Mercier authored Apr 29, 2016
  
  31cf27d6
- Added comments about listing columns and indexers in obidms functions · 5bd12079
  Celine Mercier authored Apr 29, 2016
  
  5bd12079
27 Apr, 2016 2 commits
- Fixed bug with indexer names being defined and generating seg fault if · f3b20b80
  Celine Mercier authored Apr 27, 2016
```
creating a column not using indexers
```
  f3b20b80
- Commented #ifdef directive for detect_bucket_size function because it · 0c8504b6
  Celine Mercier authored Apr 27, 2016
```
causes errors
```
  0c8504b6
26 Apr, 2016 4 commits
- changed inline functions to macros to make it work on Luke · 654c34a1
  Celine Mercier celine.mercier@ujf-grenoble.fr authored Apr 26, 2016
  
  654c34a1
- Fixed variable initialization for error detection · 2d8c06f7
  Celine Mercier authored Apr 26, 2016
  
  2d8c06f7
- Renamed MurmurHash2.c file to murmurhash2.c as it could be a problem · 36626482
  Celine Mercier authored Apr 26, 2016
  
  36626482
- Removed deprecated code · d3a6ff60
  Celine Mercier authored Apr 26, 2016
  
  d3a6ff60
25 Apr, 2016 9 commits
- Fixed all compilation problems with new function names, locations etc · 87935c66
  Celine Mercier authored Apr 25, 2016
  
  87935c66
- Made the function to clone a column in the context of a view private · 92980508
  Celine Mercier authored Apr 25, 2016
  
  92980508
- Made function to update the line count of a view private · 65880db4
  Celine Mercier authored Apr 25, 2016
  
  65880db4
- Reordered view functions for better coherence · 767d9c78
  Celine Mercier authored Apr 25, 2016
  
  767d9c78
- Updated the documentation for utils functions · 2566377e
  Celine Mercier authored Apr 25, 2016
  
  2566377e
- Documentation for views and reworked the code a little · 8cdfbb37
  Celine Mercier authored Apr 25, 2016
  
  8cdfbb37
- Reworked obiview code and added more comments · 0a55e265
  Celine Mercier authored Apr 25, 2016
  
  0a55e265
- Updated documentation in obitypes.h · 68a8509c
  Celine Mercier authored Apr 25, 2016
  
  68a8509c
- Fixed the calculation of the size of data for OBI_STR and OBI_SEQ · 5f98d2ed
  Celine Mercier authored Apr 25, 2016
```
columns
```
  5f98d2ed
22 Apr, 2016 14 commits
- Updated the documentation in obidmscolumn.h · 5d08da46
  Celine Mercier authored Apr 22, 2016
  
  5d08da46
- Creating a column now uses the function to create the indexer name if · 66045acf
  Celine Mercier authored Apr 22, 2016
```
one was not provided
```
  66045acf
- Improved function to build an indexer name · 6977c431
  Celine Mercier authored Apr 22, 2016
  
  6977c431
- Added a function to build indexer names · 839b3000
  Celine Mercier authored Apr 22, 2016
  
  839b3000
- changed MAP_PRIVATE flags to MAP_SHARED when opening a column because it · ffa45579
  Celine Mercier authored Apr 22, 2016
```
seems a lot more efficient
```
  ffa45579
- Fixed initialization of NA values for OBI_STR and OBI_SEQ columns · 003cd113
  Celine Mercier authored Apr 22, 2016
  
  003cd113
- Uncommented an error message that doesn't need to be commented anymore · c87227b6
  Celine Mercier authored Apr 22, 2016
  
  c87227b6
- Updated the documentation for OBI_STR columns · c07e75f2
  Celine Mercier authored Apr 22, 2016
  
  c07e75f2
- Updated the documentation for OBI_SEQ columns · 6b394a5c
  Celine Mercier authored Apr 22, 2016
  
  6b394a5c
- Deleted more unused inclusions in OBI_STR and OBI_SEQ column types code · 2416b8cc
  Celine Mercier authored Apr 22, 2016
  
  2416b8cc
- Removed unused inclusions and definitions in all column types code · b9921e11
  Celine Mercier authored Apr 22, 2016
  
  b9921e11
- Removed unused definition in OBI_IDX columns code · 8f5aa884
  Celine Mercier authored Apr 22, 2016
  
  8f5aa884
- Updated the documentation for columns with the type OBI_IDX · 900d67de
  Celine Mercier authored Apr 22, 2016
  
  900d67de
- Updated the documentation for obidms functions · 22e3c3ee
  Celine Mercier authored Apr 22, 2016
  
  22e3c3ee
21 Apr, 2016 4 commits
- Finished moving obiblob functions to obiblob files and documentation for · 4ead37ee
  Celine Mercier authored Apr 21, 2016
```
obiblob functions
```
  4ead37ee
- Documentation for obiblob indexer API · bce360bb
  Celine Mercier authored Apr 21, 2016
  
  bce360bb
- Improved AVL tree documentation · 2a68cb26
  Celine Mercier authored Apr 21, 2016
  
  2a68cb26
- Updated AVL documentation · 043e70ff
  Celine Mercier authored Apr 21, 2016
  
  043e70ff