Commits · 6a8df069ad4908a3d77034785b490a4f3af96453 · OBITools / OBITools3

18 May, 2016 1 commit

Indexers are now cloned if needed to modify them after they've been · 6a8df069

Celine Mercier authored May 18, 2016

closed. Obligatory indexers' names now follow the same pattern as other
indexers (columnname_version). Closes #46 and #49.

6a8df069

11 May, 2016 3 commits
- First version of quality handling (not working yet) and now it is · 8ae76449
  Celine Mercier authored May 11, 2016
```
checked that a column is writable before enlarging it
```
  8ae76449
- First version of alignment functions (imported from suma* programs) · b3c47809
  Celine Mercier authored May 11, 2016
  
  b3c47809
- Now when a column is added to a view, if there is a line selection, all · 35676813
  Celine Mercier authored May 11, 2016
```
columns in the view are cloned first
```
  35676813
09 May, 2016 1 commit
- Deleting CeCILL license duplicates · 757ef850
  Celine Mercier authored May 09, 2016
  
  757ef850
04 May, 2016 1 commit
- Minor improvements in _obidms Cython layer · f961621f
  Celine Mercier authored May 04, 2016
  
  f961621f
02 May, 2016 3 commits
- Reworked and commented a bit the cython layer for dms, columns and views · bc123604
  Celine Mercier authored May 02, 2016
  
  bc123604
- Removed a list of column pointers kept in the OBIView class that was not · 872071b1
  Celine Mercier authored May 02, 2016
```
really needed
```
  872071b1
- Adding CeCILL license · 32cc8968
  Celine Mercier authored May 02, 2016
  
  32cc8968
29 Apr, 2016 9 commits
- Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git · d6481f0d
  Celine Mercier authored Apr 29, 2016
  
  d6481f0d
- Relative paths when creating or opening a DMS now work · a32920e4
  Celine Mercier authored Apr 29, 2016
  
  a32920e4
- Added indexer function that returns the name of the indexer · 31cf27d6
  Celine Mercier authored Apr 29, 2016
  
  31cf27d6
- commenting _obidms.pyx · baba2d74
  Celine Mercier authored Apr 29, 2016
  
  baba2d74
- Added comments about listing columns and indexers in obidms functions · 5bd12079
  Celine Mercier authored Apr 29, 2016
  
  5bd12079
- Re-re-fixed line breaks in README file · 072ee5ac
  Celine Mercier authored Apr 29, 2016
  
  072ee5ac
- Refixed line breaks in README file · 9fe21316
  Celine Mercier authored Apr 29, 2016
  
  9fe21316
- Fixed line breaks in README file · 3dc3aaa4
  Celine Mercier authored Apr 29, 2016
  
  3dc3aaa4
- Adding README file · b371030e
  Celine Mercier authored Apr 29, 2016
  
  b371030e
28 Apr, 2016 2 commits
- Merge branch 'luke_tests' · b3976fa4
  Celine Mercier authored Apr 28, 2016
  
  b3976fa4
- Merging luke_tests branch without the commit turning inline functions in macros · 6ea2cfb9
  Celine Mercier authored Apr 28, 2016
  
  6ea2cfb9
27 Apr, 2016 8 commits
- Pseudo obihead for tests · 0eca8610
  Celine Mercier authored Apr 27, 2016
  
  0eca8610
- pseudo obigrep for tests · 0de953a3
  Celine Mercier authored Apr 27, 2016
  
  0de953a3
- Fixed bug with indexer names being defined and generating seg fault if · f3b20b80
  Celine Mercier authored Apr 27, 2016
```
creating a column not using indexers
```
  f3b20b80
- Fixed obi import trying to print all lines at the end (source of · d159b921
  Celine Mercier authored Apr 27, 2016
```
segfault?)
```
  d159b921
- Added all C files as source files for all cython files to stop having · 4e4cf46b
  Celine Mercier authored Apr 27, 2016
```
that kind of problem with linux systems
```
  4e4cf46b
- Added more C source files for _obiseq · 6b615336
  Celine Mercier authored Apr 27, 2016
  
  6b615336
- Added files in _obitaxo C sources for cython · 41988548
  Celine Mercier authored Apr 27, 2016
  
  41988548
- Commented #ifdef directive for detect_bucket_size function because it · 0c8504b6
  Celine Mercier authored Apr 27, 2016
```
causes errors
```
  0c8504b6
26 Apr, 2016 5 commits
- changed inline functions to macros to make it work on Luke · 654c34a1
  Celine Mercier celine.mercier@ujf-grenoble.fr authored Apr 26, 2016
  
  654c34a1
- Fixed variable initialization for error detection · 2d8c06f7
  Celine Mercier authored Apr 26, 2016
  
  2d8c06f7
- import command a bit modified for tests · a6c8d354
  Celine Mercier authored Apr 26, 2016
  
  a6c8d354
- Renamed MurmurHash2.c file to murmurhash2.c as it could be a problem · 36626482
  Celine Mercier authored Apr 26, 2016
  
  36626482
- Removed deprecated code · d3a6ff60
  Celine Mercier authored Apr 26, 2016
  
  d3a6ff60
25 Apr, 2016 7 commits
- Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git · 5ca84b91
  Celine Mercier authored Apr 25, 2016
  
  5ca84b91
- Fixed all compilation problems with new function names, locations etc · 87935c66
  Celine Mercier authored Apr 25, 2016
  
  87935c66
- Made the function to clone a column in the context of a view private · 92980508
  Celine Mercier authored Apr 25, 2016
  
  92980508
- Made function to update the line count of a view private · 65880db4
  Celine Mercier authored Apr 25, 2016
  
  65880db4
- Reordered view functions for better coherence · 767d9c78
  Celine Mercier authored Apr 25, 2016
  
  767d9c78
- Updated the documentation for utils functions · 2566377e
  Celine Mercier authored Apr 25, 2016
  
  2566377e
- Updated obiversion_t declaration · 1fbbdd43
  Celine Mercier authored Apr 25, 2016
  
  1fbbdd43