MANIFEST.in
README
setup.py
src/ace2fasta.py
src/ali2consensus.py
src/arbTaxonomy.py
src/convert2fasta.py
src/convertEcoPCRDB.py
src/ecoDBTaxStat.py
src/ecoGraph.py
src/ecoTagAbstract.py
src/ecoTagMergeAbstract.py
src/ecoTaxSpecificity.py
src/ecoTaxStat.py
src/ecopcr2fasta.py
src/ecopcr2new.py
src/ecotag.py
src/extractCDS.py
src/extractreads.py
src/extractreads2.py
src/fasta454Filter.py
src/fasta454cdna.py
src/fastaAddTaxid.py
src/fastaConcat.py
src/fastaCut.py
src/fastaKeys.py
src/fastaMergeTags.py
src/fastaObservedDist.py
src/fastaSpecies.py
src/fastaTaxSample.py
src/fastaTaxid.py
src/fastaWindows.py
src/fastaWordCount.py
src/gr2ecoprimer.py
src/jwarcher2tab.py
src/ngsfilter.py
src/obiaddtaxids.py
src/obiannotate.py
src/obiclean.py
src/obicomplement.py
src/obiconvert.py
src/obicount.py
src/obidistribute.py
src/obigrep.py
src/obihead.py
src/obijoinpairend.py
src/obindex.py
src/obingssim.py
src/obipcrerror.py
src/obipython.py
src/obisample.py
src/obiselect.py
src/obisort.py
src/obisplit.py
src/obistat.py
src/obitab.py
src/obitail.py
src/obitaxonomy.py
src/obitools_test.py
src/obiuniq.py
src/oligotag.py
src/selfecotag.py
src/solexaMerge.py
src/solexapairend.py
src/solexapairendnull.py
src/tagMatcher2tab.py
src/tagMatcherAnnotate.py
src/tagMatcherGrep.py
src/taxonStat.py
src/vaccumblaster.py
src/OBITools.egg-info/PKG-INFO
src/OBITools.egg-info/SOURCES.txt
src/OBITools.egg-info/dependency_links.txt
src/OBITools.egg-info/not-zip-safe
src/OBITools.egg-info/top_level.txt
src/obitools/SVGdraw.py
src/obitools/__init__.py
src/obitools/_obitools.c
src/obitools/_obitools.h
src/obitools/_obitools.pxd
src/obitools/_obitools.pyx
src/obitools/collections.py
src/obitools/decorator.py
src/obitools/fast.py
src/obitools/gzip.py
src/obitools/sample.py
src/obitools/solexaPairEnd.py
src/obitools/svg.py
src/obitools/version.py
src/obitools/zipfile.py
src/obitools/align/__init__.py
src/obitools/align/_assemble.c
src/obitools/align/_assemble.pxd
src/obitools/align/_assemble.pyx
src/obitools/align/_codonnws.c
src/obitools/align/_codonnws.pxd
src/obitools/align/_codonnws.pyx
src/obitools/align/_dynamic.c
src/obitools/align/_dynamic.pxd
src/obitools/align/_dynamic.pyx
src/obitools/align/_freeendgap.c
src/obitools/align/_freeendgap.pxd
src/obitools/align/_freeendgap.pyx
src/obitools/align/_freeendgapfm.c
src/obitools/align/_freeendgapfm.pxd
src/obitools/align/_freeendgapfm.pyx
src/obitools/align/_gprofilenws.c
src/obitools/align/_gprofilenws.pxd
src/obitools/align/_gprofilenws.pyx
src/obitools/align/_lcs.c
src/obitools/align/_lcs.ext.1.c
src/obitools/align/_lcs.ext.2.c
src/obitools/align/_lcs.ext.3.c
src/obitools/align/_lcs.ext.4.c
src/obitools/align/_lcs.h
src/obitools/align/_lcs.pxd
src/obitools/align/_lcs.pyx
src/obitools/align/_lcs_fast.h
src/obitools/align/_nws.c
src/obitools/align/_nws.pxd
src/obitools/align/_nws.pyx
src/obitools/align/_nwsdnabyprot.c
src/obitools/align/_nwsdnabyprot.pxd
src/obitools/align/_nwsdnabyprot.pyx
src/obitools/align/_profilenws.c
src/obitools/align/_profilenws.pxd
src/obitools/align/_profilenws.pyx
src/obitools/align/_qsassemble.c
src/obitools/align/_qsassemble.pyx
src/obitools/align/_qsrassemble.c
src/obitools/align/_qsrassemble.pyx
src/obitools/align/_rassemble.c
src/obitools/align/_rassemble.pxd
src/obitools/align/_rassemble.pyx
src/obitools/align/_sse.h
src/obitools/align/_upperbond.c
src/obitools/align/_upperbond.ext.1.c
src/obitools/align/_upperbond.h
src/obitools/align/_upperbond.pxd
src/obitools/align/_upperbond.pyx
src/obitools/align/array.pxd
src/obitools/align/arrayarray.h
src/obitools/align/homopolymere.py
src/obitools/align/ssearch.py
src/obitools/alignment/__init__.py
src/obitools/alignment/ace.py
src/obitools/barcodecoverage/__init__.py
src/obitools/barcodecoverage/calcBc.py
src/obitools/barcodecoverage/drawBcTree.py
src/obitools/barcodecoverage/findErrors.py
src/obitools/barcodecoverage/readFiles.py
src/obitools/barcodecoverage/writeBcTree.py
src/obitools/blast/__init__.py
src/obitools/carto/__init__.py
src/obitools/distances/__init__.py
src/obitools/distances/observed.py
src/obitools/distances/phylip.py
src/obitools/distances/r.py
src/obitools/dnahash/__init__.py
src/obitools/ecobarcode/__init__.py
src/obitools/ecobarcode/databases.py
src/obitools/ecobarcode/ecotag.py
src/obitools/ecobarcode/options.py
src/obitools/ecobarcode/rawdata.py
src/obitools/ecobarcode/taxonomy.py
src/obitools/ecopcr/__init__.py
src/obitools/ecopcr/annotation.py
src/obitools/ecopcr/options.py
src/obitools/ecopcr/sequence.py
src/obitools/ecopcr/taxonomy.py
src/obitools/ecotag/__init__.py
src/obitools/ecotag/parser.py
src/obitools/eutils/__init__.py
src/obitools/fasta/__init__.py
src/obitools/fasta/_fasta.c
src/obitools/fasta/_fasta.pxd
src/obitools/fasta/_fasta.pyx
src/obitools/fastq/__init__.py
src/obitools/fastq/_fastq.c
src/obitools/fastq/_fastq.pyx
src/obitools/fastq/array.pxd
src/obitools/fastq/arrayarray.h
src/obitools/fnaqual/__init__.py
src/obitools/fnaqual/fasta.py
src/obitools/fnaqual/quality.py
src/obitools/format/__init__.py
src/obitools/format/_format.c
src/obitools/format/_format.pyx
src/obitools/format/options.py
src/obitools/format/genericparser/__init__.py
src/obitools/format/genericparser/_genericparser.c
src/obitools/format/genericparser/_genericparser.pyx
src/obitools/format/ontology/__init__.py
src/obitools/format/ontology/go_obo.py
src/obitools/format/sequence/__init__.py
src/obitools/format/sequence/embl.py
src/obitools/format/sequence/fasta.py
src/obitools/format/sequence/fastq.py
src/obitools/format/sequence/fnaqual.py
src/obitools/format/sequence/genbank.py
src/obitools/format/sequence/tagmatcher.py
src/obitools/goa/__init__.py
src/obitools/goa/parser.py
src/obitools/graph/__init__.py
src/obitools/graph/dag.py
src/obitools/graph/rootedtree.py
src/obitools/graph/tree.py
src/obitools/graph/algorithms/__init__.py
src/obitools/graph/algorithms/clique.py
src/obitools/graph/algorithms/compact.py
src/obitools/graph/algorithms/component.py
src/obitools/graph/layout/__init__.py
src/obitools/graph/layout/radialtree.py
src/obitools/interactive/__init__.py
src/obitools/location/__init__.py
src/obitools/location/feature.py
src/obitools/metabarcoding/__init__.py
src/obitools/metabarcoding/options.py
src/obitools/obischemas/__init__.py
src/obitools/obischemas/options.py
src/obitools/obischemas/kb/__init__.py
src/obitools/obischemas/kb/extern.py
src/obitools/obo/__init__.py
src/obitools/obo/parser.py
src/obitools/obo/go/__init__.py
src/obitools/obo/go/parser.py
src/obitools/options/__init__.py
src/obitools/options/_bioseqfilter.c
src/obitools/options/_bioseqfilter.pyx
src/obitools/options/_options.c
src/obitools/options/_options.pyx
src/obitools/options/bioseqcutter.py
src/obitools/options/bioseqedittag.py
src/obitools/options/bioseqfilter.py
src/obitools/options/taxonomyfilter.py
src/obitools/parallel/__init__.py
src/obitools/parallel/jobqueue.py
src/obitools/phylogeny/__init__.py
src/obitools/phylogeny/newick.py
src/obitools/profile/__init__.py
src/obitools/profile/_profile.c
src/obitools/profile/_profile.pxd
src/obitools/profile/_profile.pyx
src/obitools/seqdb/__init__.py
src/obitools/seqdb/dnaparser.py
src/obitools/seqdb/blastdb/__init__.py
src/obitools/seqdb/embl/__init__.py
src/obitools/seqdb/embl/parser.py
src/obitools/seqdb/genbank/__init__.py
src/obitools/seqdb/genbank/ncbi.py
src/obitools/seqdb/genbank/parser.py
src/obitools/sequenceencoder/__init__.py
src/obitools/solexa/__init__.py
src/obitools/statistics/__init__.py
src/obitools/statistics/hypergeometric.py
src/obitools/statistics/noncentralhypergeo.py
src/obitools/table/__init__.py
src/obitools/table/csv.py
src/obitools/tagmatcher/__init__.py
src/obitools/tagmatcher/options.py
src/obitools/tagmatcher/parser.py
src/obitools/thermo/__init__.py
src/obitools/tools/__init__.py
src/obitools/tools/_solexapairend.c
src/obitools/tools/_solexapairend.pyx
src/obitools/tools/array.pxd
src/obitools/tools/arrayarray.h
src/obitools/tools/solexapairend.py
src/obitools/tree/__init__.py
src/obitools/tree/dot.py
src/obitools/tree/layout.py
src/obitools/tree/newick.py
src/obitools/tree/svg.py
src/obitools/tree/unrooted.py
src/obitools/unit/__init__.py
src/obitools/unit/obitools/__init__.py
src/obitools/utils/__init__.py
src/obitools/utils/_utils.c
src/obitools/utils/_utils.pxd
src/obitools/utils/_utils.pyx
src/obitools/utils/bioseq.py
src/obitools/utils/crc64.py
src/obitools/utils/iterator.py
src/obitools/word/__init__.py
src/obitools/word/_binary.c
src/obitools/word/_binary.pyx
src/obitools/word/_readindex.c
src/obitools/word/_readindex.ext.1.c
src/obitools/word/_readindex.h
src/obitools/word/_readindex.pyx
src/obitools/word/options.py
src/obitools/word/predicate.py