Everything
All Classes
exceptions.AssertionError
obitools.AASequence
obitools.BioSequence
obitools.DNAComplementSequence
obitools.NucSequence
obitools.SVGdraw.SVGelement
obitools.SVGdraw.animate
obitools.SVGdraw.animateColor
obitools.SVGdraw.animateMotion
obitools.SVGdraw.animateTransform
obitools.SVGdraw.circle
obitools.SVGdraw.cursor
obitools.SVGdraw.defs
obitools.SVGdraw.description
obitools.SVGdraw.drawing
obitools.SVGdraw.ellipse
obitools.SVGdraw.group
obitools.SVGdraw.image
obitools.SVGdraw.line
obitools.SVGdraw.lineargradient
obitools.SVGdraw.link
obitools.SVGdraw.marker
obitools.SVGdraw.path
obitools.SVGdraw.pathdata
obitools.SVGdraw.pattern
obitools.SVGdraw.point
obitools.SVGdraw.polygon
obitools.SVGdraw.polyline
obitools.SVGdraw.radialgradient
obitools.SVGdraw.rect
obitools.SVGdraw.script
obitools.SVGdraw.set
obitools.SVGdraw.spannedtext
obitools.SVGdraw.stop
obitools.SVGdraw.style
obitools.SVGdraw.svg
obitools.SVGdraw.switch
obitools.SVGdraw.symbol
obitools.SVGdraw.text
obitools.SVGdraw.textpath
obitools.SVGdraw.title
obitools.SVGdraw.tref
obitools.SVGdraw.tspan
obitools.SVGdraw.use
obitools.SVGdraw.view
obitools.SubSequence
obitools.WrappedBioSequence
obitools.WrapperSet
obitools.WrapperSetIterator
obitools.align.Alignement
obitools.align.homopolymere.HomoNucBioSeq
obitools.align.ssearch.SsearchParser
obitools.alignment.AlignedSequence
obitools.alignment.Alignement
obitools.blast.Blast
obitools.blast.BlastCovMinFilter
obitools.blast.BlastMatch
obitools.blast.BlastResult
obitools.blast.BlastResultIterator
obitools.blast.NetBlast
obitools.carto.BoxFeature
obitools.carto.Feature
obitools.carto.Level
obitools.carto.Map
obitools.carto.MultiPartFeature
obitools.carto.SimpleFeature
obitools.carto.SubLevel
obitools.carto.TagFeature
obitools.cns.quality.QualitySequence
obitools.distances.DistanceMatrix
obitools.distances.observed.Pairewise
obitools.distances.observed.PairewiseGapRemoval
obitools.ecopcr.EcoPCRDBFile
obitools.ecopcr.EcoPCRFile
obitools.ecopcr.annotation.EcoPCRDBAnnotationWriter
obitools.ecopcr.sequence.EcoPCRDBSequenceIterator
obitools.ecopcr.sequence.EcoPCRDBSequenceWriter
obitools.ecopcr.taxonomy.EcoTaxonomyDB
obitools.ecopcr.taxonomy.Taxonomy
obitools.ecopcr.taxonomy.TaxonomyDump
obitools.ecotag.EcoTagResult
obitools.ecotag.parser.EcoTagAbstractIterator
obitools.ecotag.parser.EcoTagFileIterator
obitools.eutils.EFetch
obitools.eutils.EUtils
obitools.fast.Fast
obitools.format.genericparser.GenericParser
obitools.format.ontology.go_obo.Entry
obitools.format.ontology.go_obo.Header
obitools.format.ontology.go_obo.OBOFile
obitools.format.ontology.go_obo.RelatedTerm
obitools.format.ontology.go_obo.Term
obitools.format.ontology.go_obo.Xref
obitools.goa.parser.GoAFileIterator
obitools.graph.DiGraph
obitools.graph.Edge
obitools.graph.Graph
obitools.graph.Indexer
obitools.graph.Node
obitools.graph.UndirectedGraph
obitools.graph.dag.DAG
obitools.graph.dag.DAGNode
obitools.graph.rootedtree.RootedTree
obitools.graph.rootedtree.RootedTreeNode
obitools.graph.tree.Forest
obitools.graph.tree.TreeNode
obitools.gzip.GzipFile
obitools.location.ComplementLocation
obitools.location.CompositeLocation
obitools.location.Location
obitools.location.PointLocation
obitools.location.SimpleLocation
obitools.location.feature.Feature
obitools.obischemas.kb.Connection
obitools.obischemas.kb.Cursor
obitools.obischemas.kb.extern.Connection
obitools.obischemas.kb.extern.Cursor
obitools.obo.go.parser.GOEntry
obitools.obo.go.parser.GOTerm
obitools.obo.parser.DefValue
obitools.obo.parser.FileFormatError
obitools.obo.parser.NameValue
obitools.obo.parser.NamespaceValue
obitools.obo.parser.OBOEntry
obitools.obo.parser.OBOTerm
obitools.obo.parser.RelationshipValue
obitools.obo.parser.RemarkValue
obitools.obo.parser.SynonymValue
obitools.obo.parser.TaggedValue
obitools.obo.parser.TrailingModifier
obitools.obo.parser.Xref
obitools.obo.parser.XrefValue
obitools.parallel.Task
obitools.parallel.TaskPool
obitools.parallel.jobqueue.Job
obitools.parallel.jobqueue.JobIterator
obitools.parallel.jobqueue.JobPool
obitools.phylogeny.PhylogenicEdge
obitools.phylogeny.PhylogenicNode
obitools.phylogeny.PhylogenicTree
obitools.seqdb.AnnotatedAASequence
obitools.seqdb.AnnotatedNucSequence
obitools.seqdb.AnnotatedSequence
obitools.seqdb.dnaparser.UnknownFormatError
obitools.seqdb.embl.EmblSequence
obitools.seqdb.genbank.GbSequence
obitools.seqdb.genbank.GpepSequence
obitools.seqdb.genbank.ncbi.NCBIAccession
obitools.seqdb.genbank.ncbi.NCBIGenbank
obitools.seqdb.genbank.ncbi.NCBIGenpep
obitools.sequenceencoder.DNAComplementEncoder
obitools.sequenceencoder.SeqFragmentEncoder
obitools.sequenceencoder.SequenceEncoder
obitools.solexa.SolexaFile
obitools.solexa.SolexaSequence
obitools.statistics.noncentralhypergeo.Interval
obitools.statistics.noncentralhypergeo.Product
obitools.svg.Circle
obitools.svg.Line
obitools.svg.Rectangle
obitools.svg.Scene
obitools.svg.Text
obitools.table.ProjectionIterator
obitools.table.SelectionIterator
obitools.table.Table
obitools.table.TableIterator
obitools.table.TableIteratorAsDict
obitools.table.TableRow
obitools.table.UnionIterator
obitools.table.iTableIterator
obitools.tagmatcher.TagMatcherSequence
obitools.tagmatcher.parser.TagMatcherIterator
obitools.tree.Tree
obitools.tree.TreeNode
obitools.tree.layout.NodeLayout
obitools.tree.layout.TreeLayout
obitools.unit.obitools.AABioseqTest
obitools.unit.obitools.BioseqTest
obitools.unit.obitools.NucBioseqTest
obitools.utils.CachedDB
obitools.utils.ColumnFile
obitools.zipfile.BadZipfile
obitools.zipfile.LargeZipFile
obitools.zipfile.PyZipFile
obitools.zipfile.ZipFile
obitools.zipfile.ZipInfo
All Functions
obitools.align.alignmentReader
obitools.align.ssearch.run
obitools.align.ssearch.ssearchIterator
obitools.alignment.ace.contigIterator
obitools.alignment.alignmentReader
obitools.alignment.columnIterator
obitools.bioSeqGenerator
obitools.cns.fasta.cnsFastaIterator
obitools.cns.quality.qualityIterator
obitools.distances.phylip.writePhylipMatrix
obitools.distances.r.writeRMatrix
obitools.dnahash.hashCodeIterator
obitools.dnahash.hashSequence
obitools.dnahash.hashSequences
obitools.ecopcr.taxonomy.ecoTaxonomyWriter
obitools.ecotag.parser.ecoTagAbstractFilter
obitools.ecotag.parser.ecoTagIdentifiedFilter
obitools.fasta.fastaAAIterator
obitools.fasta.fastaAAParser
obitools.fasta.fastaIterator
obitools.fasta.fastaNucIterator
obitools.fasta.fastaNucParser
obitools.fasta.fastaParser
obitools.fasta.formatFasta
obitools.fasta.parseFastaDescription
obitools.format.genericparser.genericEntryIteratorGenerator
obitools.graph.algorithms.clique.cliqueIterator
obitools.graph.algorithms.compact.compactGraph
obitools.graph.algorithms.component.componentCount
obitools.graph.algorithms.component.componentIterator
obitools.graph.selectEdgeAttributeFactory
obitools.gzip.open
obitools.location.extractExternalRefs
obitools.location.feature.featureFactory
obitools.location.feature.featureIterator
obitools.location.feature.ftParser
obitools.location.feature.qualifierIterator
obitools.location.feature.textFeatureIterator
obitools.location.locationGenerator
obitools.obischemas.getConnection
obitools.obischemas.initConnection
obitools.obischemas.kb.getConnection
obitools.obischemas.options.addConnectionOptions
obitools.obo.go.parser.GOEntryFactory
obitools.obo.go.parser.GOEntryIterator
obitools.obo.parser.OBOEntryFactory
obitools.obo.parser.OBOEntryIterator
obitools.obo.parser.stanzaIterator
obitools.obo.parser.taggedValueFactory
obitools.obo.parser.trailingModifierFactory
obitools.obo.parser.xrefFactory
obitools.options.allEntryIterator
obitools.options.bioseqcutter.addSequenceCuttingOptions
obitools.options.bioseqcutter.cutterGenerator
obitools.options.bioseqcutter.cutterIteratorGenerator
obitools.options.bioseqedittag.addSequenceEditTagOptions
obitools.options.bioseqedittag.sequenceTaggerGenerator
obitools.options.bioseqfilter.addSequenceFilteringOptions
obitools.options.bioseqfilter.filterGenerator
obitools.options.bioseqfilter.sequenceFilterIteratorGenerator
obitools.options.currentFileSize
obitools.options.currentFileTell
obitools.options.currentInputFile
obitools.options.currentInputFileName
obitools.options.getOptionManager
obitools.options.taxonomyfilter.addTaxonomyDBOptions
obitools.options.taxonomyfilter.addTaxonomyFilterOptions
obitools.options.taxonomyfilter.loadTaxonomyDatabase
obitools.options.taxonomyfilter.taxonomyFilterGenerator
obitools.options.taxonomyfilter.taxonomyFilterIteratorGenerator
obitools.phylogeny.newick.nodeParser
obitools.phylogeny.newick.nodeWriter
obitools.phylogeny.newick.subNodeIterator
obitools.phylogeny.newick.treeIterator
obitools.phylogeny.newick.treeParser
obitools.phylogeny.newick.treeWriter
obitools.seqdb.dnaparser.nucleicParser
obitools.seqdb.dnaparser.whichParser
obitools.seqdb.embl.parser.emblIterator
obitools.seqdb.embl.parser.emblParser
obitools.seqdb.genbank.ncbi.Genbank
obitools.seqdb.genbank.ncbi.Genpep
obitools.seqdb.genbank.parser.genbankIterator
obitools.seqdb.genbank.parser.genbankParser
obitools.seqdb.genbank.parser.genpepIterator
obitools.seqdb.genbank.parser.genpepParser
obitools.statistics.hypergeometric.chypergeometric
obitools.statistics.hypergeometric.hypergeometric
obitools.statistics.hypergeometric.multipleTest
obitools.statistics.noncentralhypergeo.cmpb
obitools.statistics.noncentralhypergeo.cnp
obitools.statistics.noncentralhypergeo.dec_log
obitools.statistics.noncentralhypergeo.fact
obitools.statistics.noncentralhypergeo.hypergeometic
obitools.statistics.noncentralhypergeo.nchypergeometique
obitools.svg.colorstr
obitools.svg.test
obitools.table.concatTables
obitools.table.csv.csvIterator
obitools.table.projectTable
obitools.table.subTable
obitools.table.tableFactory
obitools.tagmatcher.options.addTagMatcherErrorOptions
obitools.tagmatcher.parser.formatTagMatcher
obitools.tagmatcher.parser.tagMatcherParser
obitools.tree.dot.nodeWriter
obitools.tree.dot.treeWriter
obitools.tree.layout.constantColorGenerator
obitools.tree.layout.isTerminalNode
obitools.tree.layout.notPredicatGenerator
obitools.tree.layout.predicatGeneratorIsInfoEqual
obitools.tree.newick.nodeParser
obitools.tree.newick.nodeWriter
obitools.tree.newick.subNodeIterator
obitools.tree.newick.treeIterator
obitools.tree.newick.treeParser
obitools.tree.newick.treeWriter
obitools.tree.svg.displayTreeLayout
obitools.tree.unrooted.subtreeLayout
obitools.tree.unrooted.treeLayout
obitools.utils.bioseq.sortSequence
obitools.utils.bioseq.uniqSequence
obitools.utils.crc64.CRC64
obitools.utils.crc64.CRC64digest
obitools.utils.endLessIterator
obitools.utils.fileSize
obitools.utils.iterator.uniqueChain
obitools.utils.moduleInDevelopment
obitools.utils.multiLineWrapper
obitools.utils.progressBar
obitools.utils.skipWhiteLineIterator
obitools.utils.universalOpen
obitools.utils.universalTell
obitools.word.allWordIterator
obitools.word.binary.allWordIterator
obitools.word.binary.bitCount
obitools.word.binary.countA
obitools.word.binary.countAT
obitools.word.binary.countC
obitools.word.binary.countCG
obitools.word.binary.countG
obitools.word.binary.countT
obitools.word.binary.decodeWord
obitools.word.binary.homoMax
obitools.word.binary.wordDist
obitools.word.options.addOligoOptions
obitools.word.options.dnaWordIterator
obitools.word.predicat.distMinGenerator
obitools.word.predicat.gcUpperBondGenerator
obitools.word.predicat.homoPolymerGenerator
obitools.word.predicat.rePredicatGenerator
obitools.word.wordCount
obitools.word.wordDist
obitools.word.wordIterator
obitools.word.wordSelector
obitools.zipfile.is_zipfile
All Variables
obitools.SVGdraw.False
obitools.SVGdraw.True
obitools.SVGdraw.__doc__
obitools.SVGdraw.__package__
obitools.SVGdraw.use_dom_implementation
obitools.__package__
obitools.align.__package__
obitools.align.homopolymere.__package__
obitools.align.ssearch.__package__
obitools.alignment.__package__
obitools.alignment.ace.__package__
obitools.blast.__package__
obitools.carto.__package__
obitools.cns.__package__
obitools.cns.cnsTag
obitools.cns.fasta.__package__
obitools.cns.quality.__package__
obitools.decorator.__package__
obitools.distances.__package__
obitools.distances.observed.__package__
obitools.distances.phylip.__package__
obitools.distances.r.__package__
obitools.dnahash.__package__
obitools.ecopcr.__package__
obitools.ecopcr.annotation.__package__
obitools.ecopcr.sequence.__package__
obitools.ecopcr.taxonomy.__package__
obitools.ecotag.__package__
obitools.ecotag.parser.__package__
obitools.eutils.__package__
obitools.fast.__package__
obitools.fasta.__package__
obitools.format.__package__
obitools.format.genericparser.__package__
obitools.format.ontology.__package__
obitools.format.ontology.go_obo.__package__
obitools.format.sequence.__package__
obitools.format.sequence.embl.__package__
obitools.format.sequence.fasta.__package__
obitools.format.sequence.genbank.__package__
obitools.format.sequence.tagmatcher.__package__
obitools.goa.__package__
obitools.goa.parser.__package__
obitools.graph.__package__
obitools.graph.algorithms.__package__
obitools.graph.algorithms.clique.__package__
obitools.graph.algorithms.compact.__package__
obitools.graph.algorithms.component.__package__
obitools.graph.dag.__package__
obitools.graph.layout.__package__
obitools.graph.layout.radialtree.__package__
obitools.graph.rootedtree.__package__
obitools.graph.tree.__package__
obitools.location.__package__
obitools.location.feature.__package__
obitools.obischemas.__connection__
obitools.obischemas.__package__
obitools.obischemas.kb.__package__
obitools.obischemas.options.__package__
obitools.obo.__package__
obitools.obo.go.__package__
obitools.obo.go.parser.__package__
obitools.obo.parser.__package__
obitools.options.__package__
obitools.options.bioseqcutter.__package__
obitools.options.bioseqedittag.__package__
obitools.options.bioseqfilter.__package__
obitools.options.taxonomyfilter.__package__
obitools.parallel.__package__
obitools.parallel.jobqueue.__package__
obitools.phylogeny.__package__
obitools.phylogeny.newick.__package__
obitools.seqdb.__package__
obitools.seqdb.blastdb.__package__
obitools.seqdb.dnaparser.__package__
obitools.seqdb.embl.__package__
obitools.seqdb.embl.parser.__package__
obitools.seqdb.genbank.__package__
obitools.seqdb.genbank.ncbi.__package__
obitools.seqdb.genbank.parser.__package__
obitools.sequenceencoder.__package__
obitools.solexa.__package__
obitools.statistics.__package__
obitools.statistics.hypergeometric.__package__
obitools.statistics.noncentralhypergeo.__package__
obitools.svg.__package__
obitools.svg.display_prog
obitools.table.__package__
obitools.table.csv.__package__
obitools.tagmatcher.__package__
obitools.tagmatcher.options.__package__
obitools.tagmatcher.parser.__package__
obitools.tree.__package__
obitools.tree.dot.__package__
obitools.tree.layout.__package__
obitools.tree.newick.__package__
obitools.tree.svg.__package__
obitools.tree.unrooted.__package__
obitools.unit.__package__
obitools.unit.obitools.__package__
obitools.unit.obitools.tests_group
obitools.unit.tests_group
obitools.utils.__package__
obitools.utils.bioseq.__package__
obitools.utils.crc64.CRCTableh
obitools.utils.crc64.CRCTablel
obitools.utils.crc64.POLY64REVh
obitools.utils.crc64.__package__
obitools.utils.crc64.isInitialized
obitools.utils.iterator.__package__
obitools.word.__package__
obitools.word.binary.__package__
obitools.word.options.__package__
obitools.word.predicat.__package__
obitools.zipfile.ZIP_DEFLATED
obitools.zipfile.ZIP_STORED
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