Package obitools :: Package blast
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Package blast

source code

Classes [hide private]
  Blast
Run blast
  NetBlast
Run blast on ncbi servers
  BlastResultIterator
  BlastResult
Results of a blast run
  BlastMatch
Blast high scoring pair between two sequences
  BlastCovMinFilter
Variables [hide private]
  __package__ = 'obitools.blast'

Imports: popen2, imap, count, iTableIterator, TableRow, Table, SelectionIterator, ColumnFile, SimpleLocation, formatFasta, sys