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FileFormatError An error derived from the class Exception. |
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TrailingModifier A class object which inherits from the class dict. |
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TaggedValue A couple 'tag:value' of an OBOEntry. |
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NameValue A couple 'name:value' inherited from the class TaggedValue. |
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DefValue A couple 'def:value' inherited from the class TaggedValue. |
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SynonymValue A couple 'synonym:value' inherited from the class TaggedValue. |
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XrefValue A couple 'xref:value' inherited from the class TaggedValue. |
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RelationshipValue A couple 'xref:value' inherited from the class TaggedValue. |
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NamespaceValue | |||
RemarkValue | |||
Xref A xref object of an OBOentry. |
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OBOEntry An entry of an OBOFile. |
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OBOTerm A stanza named 'Term'. |
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a stream of aggregated strings |
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__package__ =
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Imports: skipWhiteLineIterator, multiLineWrapper, universalOpen, genericEntryIteratorGenerator, debug, warning, re, _oboEntryIterator
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Iterator of stanza. The stanza are the basic units of OBO files.
Note: The iterator constructs stanza by aggregate strings from the OBO file. |
Dispatcher of trailing modifiers.
Note: The dispatcher is currently very simple. Only one case is treated by the function. `the function returns a class object inherited from the class dict if the trailing modifiers exist, None if they don't. |
A function used to dispatch lines of an OBOEntry between the class TaggedValue and its inherited classes.
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Dispatcher of xrefs.
Note: The dispatcher treats differently the strings between brackets (from SynonymValue and DefValue objects) and without brackets (from XrefValue objects). |
Dispatcher of stanza.
Note: The dispatcher treats differently the stanza which are OBO "Term" and the others. |
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