Package obitools :: Package tagmatcher :: Module parser
[hide private]
[frames] | no frames]

Module parser

source code

Classes [hide private]
  TagMatcherIterator
Functions [hide private]
 
__tagmatcherparser(text) source code
 
tagMatcherParser(text) source code
 
formatTagMatcher(tmseq, reader=None) source code
Variables [hide private]
  _seqMatcher = re.compile(r'(?<=TG )[acgtrymkwsbdhvnACGTRYMKW...
  _cdMatcher = re.compile(r'(?<=CD ) *([^:]+?) +: +([0-9]+)')
  _loMatcher = re.compile(r'(?<=LO ) *([ACGTRYMKWSBDHVN]+) +([...
  _dmMatcher = re.compile(r'(?<=DM )[0-9]+')
  _rmMatcher = re.compile(r'(?<=RM )[0-9]+')
  __package__ = 'obitools.tagmatcher'

Imports: re, sys, tagmatcher, nucEntryIterator, Feature, locationGenerator


Variables Details [hide private]

_seqMatcher

Value:
re.compile(r'(?<=TG   )[acgtrymkwsbdhvnACGTRYMKWSBDHVN]+')

_loMatcher

Value:
re.compile(r'(?<=LO   ) *([ACGTRYMKWSBDHVN]+) +([^ ]+) +([^ ]+) +\(([0\
-9]+)\)')