Package obitools :: Package dnahash
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Package dnahash

source code

Functions [hide private]
 
hashCodeIterator(sequence, wsize, degeneratemax=0, offset=0) source code
 
hashSequence(sequence, wsize, degeneratemax=0, offset=0, hashs=None) source code
 
hashSequences(sequences, wsize, maxpos, degeneratemax=0) source code
Variables [hide private]
  _A = [0]
  _C = [1]
  _G = [2]
  _T = [3]
  _R = [0, 2]
  _Y = [1, 3]
  _M = [1, 0]
  _K = [3, 2]
  _W = [3, 0]
  _S = [1, 2]
  _B = [1, 2, 3]
  _D = [0, 2, 3]
  _H = [0, 1, 3]
  _V = [0, 1, 2]
  _N = [0, 1, 2, 3]
  _dnahash = {'a': [0], 'b': [1, 2, 3], 'c': [1], 'd': [0, 2, 3]...
  __package__ = None
hash(x)
Variables Details [hide private]

_dnahash

Value:
{'a': [0],
 'b': [1, 2, 3],
 'c': [1],
 'd': [0, 2, 3],
 'g': [2],
 'h': [0, 1, 3],
 'k': [3, 2],
 'm': [1, 0],
...