Package obitools :: Package tree :: Module newick
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Module newick

source code

Functions [hide private]
 
subNodeIterator(data) source code
 
nodeParser(data) source code
 
treeParser(data, tree=None, parent=None) source code
 
treeIterator(file) source code
 
nodeWriter(tree, node, deep=0) source code
 
treeWriter(tree, startnode=None) source code
Variables [hide private]
  _nodeParser = re.compile(r'\s*(?P<subnodes>\(.*\))?(?P<name>[^...
  _cleanTreeData = re.compile(r'\s+')
  _treecomment = re.compile(r'\[.*\]')
  __package__ = 'obitools.tree'

Imports: re, sys, universalOpen, Tree, TreeNode


Variables Details [hide private]

_nodeParser

Value:
re.compile(r'\s*(?P<subnodes>\(.*\))?(?P<name>[^ :]+)? *(?P<bootstrap>\
[0-9\.]+)?(:(?P<distance>-?[0-9\.]+))?')