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Module Hierarchy
obitools
obitools.SVGdraw
:
Use SVGdraw to generate your SVGdrawings.
obitools.align
obitools.align.homopolymere
:
Created on 14 mai 2009
obitools.align.ssearch
obitools.alignment
obitools.alignment.ace
obitools.blast
obitools.carto
obitools.cns
obitools.cns.fasta
obitools.cns.quality
obitools.decorator
obitools.distances
obitools.distances.observed
:
Module dedicated to compute observed divergeances from an alignment.
obitools.distances.phylip
obitools.distances.r
obitools.dnahash
obitools.ecopcr
obitools.ecopcr.annotation
obitools.ecopcr.sequence
obitools.ecopcr.taxonomy
obitools.ecotag
obitools.ecotag.parser
obitools.eutils
obitools.fast
:
implement fastn/fastp sililarity search algorithm for BioSequence.
obitools.fasta
:
fasta module provides functions to read and write sequences in fasta format.
obitools.format
obitools.format.genericparser
obitools.format.ontology
obitools.format.ontology.go_obo
obitools.format.sequence
obitools.format.sequence.embl
obitools.format.sequence.fasta
obitools.format.sequence.genbank
obitools.format.sequence.tagmatcher
obitools.goa
obitools.goa.parser
obitools.graph
:
This module offert classes to manipulate graphs
obitools.graph.algorithms
obitools.graph.algorithms.clique
obitools.graph.algorithms.compact
obitools.graph.algorithms.component
obitools.graph.dag
obitools.graph.layout
obitools.graph.layout.radialtree
obitools.graph.rootedtree
obitools.graph.tree
obitools.gzip
:
Functions that read and write gzipped files.
obitools.location
obitools.location.feature
obitools.obischemas
obitools.obischemas.kb
:
kb package is devoted to manage access to postgresql database from python script
obitools.obischemas.kb.extern
:
Module : KB.extern Author : Eric Coissac Date : 03/05/2004
obitools.obischemas.options
obitools.obo
obitools.obo.go
obitools.obo.go.parser
obitools.obo.parser
obitools.options
:
Module providing high level functions to manage command line options.
obitools.options.bioseqcutter
obitools.options.bioseqedittag
obitools.options.bioseqfilter
obitools.options.taxonomyfilter
obitools.parallel
obitools.parallel.jobqueue
obitools.phylogeny
obitools.phylogeny.newick
obitools.seqdb
obitools.seqdb.blastdb
obitools.seqdb.dnaparser
obitools.seqdb.embl
obitools.seqdb.embl.parser
obitools.seqdb.genbank
obitools.seqdb.genbank.ncbi
obitools.seqdb.genbank.parser
obitools.sequenceencoder
obitools.solexa
obitools.statistics
obitools.statistics.hypergeometric
:
Module de calcules statistiques.
obitools.statistics.noncentralhypergeo
obitools.svg
:
SVG.py - Construct/display SVG scenes.
obitools.table
obitools.table.csv
:
obitools.table.csv module provides an iterator adapter allowing to parse csv (comma separatted value) file
obitools.tagmatcher
obitools.tagmatcher.options
obitools.tagmatcher.parser
obitools.tree
obitools.tree.dot
obitools.tree.layout
obitools.tree.newick
obitools.tree.svg
obitools.tree.unrooted
obitools.unit
obitools.unit.obitools
obitools.utils
obitools.utils.bioseq
obitools.utils.crc64
obitools.utils.iterator
obitools.word
obitools.word.binary
:
Created on 2 juil.
obitools.word.options
obitools.word.predicat
obitools.zipfile
:
Read and write ZIP files.
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