Package obitools :: Package format :: Package ontology :: Module go_obo :: Class Term
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Class Term

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Class Term
representing a GO term.
Instance Methods [hide private]
 
__init__(self, data=None)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature
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__checkEntry__(self) source code
 
__filtreGoid__(self)
Extract GO id.
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__filtreName__(self)
Extract GO name.
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__filtreSynonyms__(self)
Extract GO synonym(s).
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__filtreComment__(self)
manage None comments
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__filtreDef__(self)
Extract GO definition.
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__filtreParents__(self)
To make the is_a hierarchy
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__filtreRelation__(self)
To make the part_of hierarchy
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__filtreRelationships__(self)
Relation list with other GO Terms (is_a, part_of or some regulates relation)
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__filtreObsolete__(self)
for each obsolete terms corresponds a set of GO Identifiers so that this GO term is consider as others GO Terms
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__filtreAltIds__(self)
alternate(s) id(s) for this term (= alias in the geneontology schema model!)
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__filtreXRefs__(self)
cross references to other databases
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__filtreSubsets__(self)
subset label to make smaller sets of GO Terms
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Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, data=None)
(Constructor)

source code 

x.__init__(...) initializes x; see x.__class__.__doc__ for signature

Overrides: object.__init__