Package obitools :: Package blast :: Class Blast
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Class Blast

source code


Run blast

Instance Methods [hide private]
 
__init__(self, mode, db, program='blastall', **options)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature
source code
 
getMode(self) source code
 
getDb(self) source code
 
getProgram(self) source code
 
_blastcmd(self) source code
 
__call__(self, sequence)
Run blast with one sequence object
source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties [hide private]
  mode
Mode's Docstring
  db
Db's Docstring
  program
Program's Docstring

Inherited from object: __class__

Method Details [hide private]

__init__(self, mode, db, program='blastall', **options)
(Constructor)

source code 

x.__init__(...) initializes x; see x.__class__.__doc__ for signature

Overrides: object.__init__
(inherited documentation)

__call__(self, sequence)
(Call operator)

source code 

Run blast with one sequence object

Parameters:
  • sequence ()

Property Details [hide private]

mode

Mode's Docstring

Get Method:
getMode(self)

db

Db's Docstring

Get Method:
getDb(self)

program

Program's Docstring

Get Method:
getProgram(self)