Package obitools :: Package tagmatcher :: Class TagMatcherSequence
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Class TagMatcherSequence

source code


Class used to represent a nucleic sequence issued mapped on a genome by the tagMatcher software.

Instance Methods [hide private]
 
__init__(self, seq, cd, locs, dm, rm)
BioSequence constructor.
source code
 
eminEmaxFilter(self, emin=None, emax=None) source code

Inherited from NucSequence: complement, isNucleotide

Inherited from BioSequence: __contains__, __delitem__, __getitem__, __iter__, __len__, __setitem__, __str__, extractTaxon, getDefinition, getId, getRoot, getStr, getSubSeq, getSymbolAt, getTags, getWrappers, items, iteritems, iterkeys, keys, register, setDefinition, setId

Inherited from BioSequence (private): _unregister

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __subclasshook__

Properties [hide private]

Inherited from BioSequence: definition, id, wrappers

Inherited from object: __class__

Method Details [hide private]

__init__(self, seq, cd, locs, dm, rm)
(Constructor)

source code 

BioSequence constructor.

Parameters:
  • id - sequence identifier
  • seq - the sequence
  • definition - sequence definition (optional)
  • info - extra named parameters can be add to associate complementary data to the sequence
Overrides: object.__init__
(inherited documentation)