Module fastaGrep
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Module fastaGrep

source code

-------------------------------------------------------------------- fastaGrep.py -------------------------------------------------------------------- fastaGrep.py [option] -------------------------------------------------------------------- -h --help : print this help -s --sequence= : match the sequence with a regular pattern -i --identifier= : match the sequence identifier with a regular pattern -d --definition= : match the sequence definition with a regular pattern -a --attribute=: : match the sequence attribute with a regular pattern -l --lmin=## : keep sequences longer than lmin -L --lmax=## : keep sequences shorter than lmax -v : revert the sequence selection --------------------------------------------------------------------

Functions [hide private]
 
goodFastaGenerator() source code