1
2
3
4 import fileinput
5 import re
6 import getopt
7 import sys
8
9 from obitools.fasta import fastaIterator,writeFasta
10
11
13 print "-----------------------------------"
14 print " fastaComplement.py"
15 print "-----------------------------------"
16 print "fastaComplement.py <fastafile>"
17 print " complement and reverse all sequence in the fasta file"
18 print "-----------------------------------"
19 print "-h --help : print this help"
20 print "-----------------------------------"
21
22
23 if __name__=='__main__':
24
25 fasta = fastaIterator(fileinput.input())
26
27 for seq in fasta:
28 print writeFasta(seq.complement())
29