Class Hierarchy

• obitools.svg.Circle
• obitools.svg.Line
• obitools.svg.Rectangle
• obitools.svg.Scene
• obitools.svg.Text
• object: The most base type
  • set: set(iterable) --> set object Build an unordered collection.
    • obitools.tree.Tree
  • obitools.distances.DistanceMatrix
    • obitools.distances.observed.PairewiseGapRemoval: Observed divergeance matrix from an alignment.
  • obitools.BioSequence: BioSequence class is the base class for biological sequence representation.
    • obitools.AASequence
    • obitools.NucSequence
  • obitools.fast.Fast
  • obitools.utils.ColumnFile
  • obitools.tree.TreeNode
  • dict: dict() -> new empty dictionary.
    • obitools.tree.layout.NodeLayout: Layout data associated to a tree node.
    • obitools.tree.layout.TreeLayout: Description of a phylogenetic tree layout
  • list: list() -> new list...
    • obitools.align.Alignement