Package obitools :: Module fast :: Class Fast
[hide private]
[frames] | no frames]

Class Fast

source code


Instance Methods [hide private]
 
__init__(self, seq, kup=2)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature
source code
 
__call__(self, seq)
Align one sequence with the fast hash table.
source code

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, seq, kup=2)
(Constructor)

source code 
x.__init__(...) initializes x; see x.__class__.__doc__ for signature
Parameters:
  • seq, - sequence to hash
  • kup, - word size used for hashing process
Overrides: object.__init__

__call__(self, seq)
(Call operator)

source code 
Align one sequence with the fast hash table.
Parameters:
  • seq, - the sequence to align