Could not import sequence id: AE005172; (error raised: 'NoneType' object has no attribute 'group' )
I'm trying to make a reference database for trnL markers and I have an error:
This is the command I run:
obiconvert --embl -t $TAXO --ecopcrdb-output=embl_6617 $EMBL/*.dat.gz
$TAXO is a path that leads to the data found here: ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz
$EMBL/*.dat.gz is leading to the .dat.gz file (I'm trying only one to see what it would do: this one rel_con_pln_01_r141.dat.gz)
Then it starts:
Reading taxonomy dump file... List all taxonomy rank... Indexing taxonomy... Indexing parent and rank... Adding scientific name... Adding taxid alias... Adding deleted taxid... Writing the taxonomy file... Ok
And throw this error:
Could not import sequence id: AE005172; (error raised: 'NoneType' object has no attribute 'group' ) Traceback (most recent call last): File "/usr/local/bin/obiconvert", line 45, in <module> for entry in entries: File "src/obitools/options/_options.pyx", line 104, in allEntryIterator File "/usr/local/lib/python2.7/site-packages/obitools/format/options.py", line 212, in iterator s.extractTaxon() AttributeError: 'NoneType' object has no attribute 'extractTaxon'
I looked at the AE005172 sequence (https://www.ncbi.nlm.nih.gov/nuccore/AE005172.1) and it seems to be "Arabidopsis thaliana chromosome 1 top arm, complete sequence".
But I have no idea on what to do now. How should I deal with this error?