OBITools issueshttps://git.metabarcoding.org/obitools/obitools/-/issues2017-09-29T05:28:39Zhttps://git.metabarcoding.org/obitools/obitools/-/issues/15SILVA reference database parsing2017-09-29T05:28:39ZCeline MercierSILVA reference database parsingSomeone would be interested in having `obiaddtaxids` parse SILVA reference databases (it used to be able to do it but the format probably changed). I'm not sure if there are several SILVA formats or only this one:
```
>AAAA02038008.4342.6342 Eukaryota;Opisthokonta;Holozoa;Metazoa (Animalia);Eumetazoa;Bilateria;Arthropoda;Hexapoda;Insecta;Pterygota;Neoptera;Diptera;Oryza sativa Indica Group
UCUGGUUGAUCCUGCCAGUAGUU.......
>AAAB01001705.32.640 Eukaryota;Opisthokonta;Holozoa;Metazoa (Animalia);Eumetazoa;Bilateria;Arthropoda;Hexapoda;Insecta;Pterygota;Neoptera;Diptera;Anopheles gambiae str. PEST
UGAUAUACGCUCGUCUCAAAGGU.....
```
Should I write a parser for that format in `obiaddtaxids`?Someone would be interested in having `obiaddtaxids` parse SILVA reference databases (it used to be able to do it but the format probably changed). I'm not sure if there are several SILVA formats or only this one:
```
>AAAA02038008.4342.6342 Eukaryota;Opisthokonta;Holozoa;Metazoa (Animalia);Eumetazoa;Bilateria;Arthropoda;Hexapoda;Insecta;Pterygota;Neoptera;Diptera;Oryza sativa Indica Group
UCUGGUUGAUCCUGCCAGUAGUU.......
>AAAB01001705.32.640 Eukaryota;Opisthokonta;Holozoa;Metazoa (Animalia);Eumetazoa;Bilateria;Arthropoda;Hexapoda;Insecta;Pterygota;Neoptera;Diptera;Anopheles gambiae str. PEST
UGAUAUACGCUCGUCUCAAAGGU.....
```
Should I write a parser for that format in `obiaddtaxids`?