Commits · c395d7623100e6f6056c48abe06da92c281db0f7 · OBITools / OBITools · GitLab

06 Apr, 2016 2 commits
- patch a bug in the sequence counting of obiselect · c395d762
  Eric Coissac committed Apr 06, 2016
  
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- Set the Cython required version to 0.23 because of a bug in the 0.24 · b2d2346e
```
version
```
  Eric Coissac committed Apr 06, 2016
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04 Apr, 2016 2 commits
- Switch to version 1.2.3 · ffb33f61
  Eric Coissac committed Apr 04, 2016
  
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- Fixed major bug with -f UNITE_FULL option of obiaddtaxids · adbeac96
  Celine Mercier committed Apr 04, 2016
  
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17 Mar, 2016 1 commit
- Fixed typo in obiaddtaxids documentation · 2028c69b
  Celine Mercier committed Mar 17, 2016
  
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12 Jan, 2016 2 commits
- Switch to version 1.2.2 · 2649cd26
  Eric Coissac committed Jan 12, 2016
  
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- Add capacity to filter on merged sequences · 46b446f0
  Eric Coissac committed Jan 12, 2016
  
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08 Jan, 2016 1 commit
- Fixes #20 and several other bugs related to that function · 6208cbee
  Celine Mercier committed Jan 08, 2016
  
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27 Oct, 2015 4 commits
- Patch a bug related to the -E et -M options · 1d4c3f99
  Eric Coissac committed Oct 27, 2015
  
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- Switch the version number to 1.2.1 · ba30e74d
  Eric Coissac committed Oct 27, 2015
  
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- Modify the action of the -M option to fit the documentation · 0e8b97ca
  Eric Coissac committed Oct 27, 2015
  
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- Patch bug in the -E option of ecotag and add the -M option to limit the · 0e2f8598
```
action of the -E option 
```
  Eric Coissac committed Oct 27, 2015
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20 Oct, 2015 1 commit
- Add a first version of the obisubset tool and tag the version 1.2.0 · 23717f58
  Eric Coissac committed Oct 20, 2015
  
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02 Oct, 2015 1 commit

Change the way ecoPCRDB are written by obitools. If the obitools is · fdeaf595

called with several sequence files as input when the ecoPCRDB is
requested as output format, the sequences are splitted in several sdx
files

committed Oct 02, 2015

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03 Aug, 2015 2 commits
- Switch to version 1.1.22 · 343d9ec6
  Eric Coissac committed Aug 03, 2015
  
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- Patch a wrong import in the file · 7a993ec8
  Eric Coissac committed Aug 03, 2015
  
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20 Jul, 2015 1 commit
- fixed a problem with the progress bar in obiselect when there is more · 6170fac0
```
than one category
```
  celinemercier committed Jul 20, 2015
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13 Jul, 2015 1 commit
- Switch to the version 1.1.21 · 764ee27c
  Eric Coissac committed Jul 13, 2015
  
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11 Jul, 2015 1 commit
- Add a small work around patch for the --skip and --only options in · 18d87aa1
```
illuminapairedend
```
  Eric Coissac committed Jul 11, 2015
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03 Jul, 2015 4 commits
- Tag the version 1.1.20 · 1c91c27e
  Eric Coissac committed Jul 03, 2015
  
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- Patch two small print bug in the new ecotag · 22d343b4
  Eric Coissac committed Jul 03, 2015
  
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- Add docuentation for the new options and an option to manage the ecotag · 2af94b9d
```
cache size
```
  Eric Coissac committed Jul 03, 2015
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- Add two general options for limiting the analysis of a file to only a · aa064dda
```
sub-part of the data:

   - --skip <N>
   - --only <N>
   
They respectively allow to first skip the N first sequences, and to
analysize only the <N> next sequences.
```
  Eric Coissac committed Jul 03, 2015
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02 Jul, 2015 1 commit
- Add a --minimum-circle option to ecotag and a cache on the self · f38ccae6
```
alignment scores of 1000000 of pairwise scores
```
  Eric Coissac committed Jul 02, 2015
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12 Jun, 2015 1 commit
- Closes #9 : adds a parser in obiaddtaxids for the UNITE 'general FASTA · b9988181
```
release' format
```
  Celine Mercier committed Jun 12, 2015
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11 Jun, 2015 1 commit
- updated the UNITE parser of obiaddtaxids · df093b3f
  Celine Mercier committed Jun 11, 2015
  
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02 Jun, 2015 2 commits
- Switch to the 1.1.18 version · 9ba67985
  Eric Coissac committed Jun 02, 2015
  
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- tag the 1.1.17 version · b9fa718a
  Eric Coissac committed Jun 02, 2015
  
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01 Jun, 2015 2 commits
- fixing a documentation problem (issue #3 ) · 6bf6cc66
  Celine Mercier committed Jun 01, 2015
  
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- modified the obisilva script to deal with version names containing dots, · 191af966
```
e.g. "119.1"
```
  Celine Mercier committed Jun 01, 2015
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22 May, 2015 1 commit
- Fixes #3 · 18c3a7dc
  Celine Mercier committed May 22, 2015
  
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28 Apr, 2015 2 commits
- Switch to version 1.1.16 · 83b60ab7
  Eric Coissac committed Apr 28, 2015
  
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- Patch a bug in the getTaxid function · 8f617231
  Eric Coissac committed Apr 28, 2015
  
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15 Apr, 2015 1 commit
- Switch to version 1.1.6 · 704dbd50
  Eric Coissac committed Apr 15, 2015
  
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21 Mar, 2015 1 commit
- Debug the reading of gziped files, change the doc of obipr2 and obisilva · 6bfec50f
  Eric Coissac committed Mar 21, 2015
  
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14 Mar, 2015 1 commit
- --no commit message · 28dad843
  Eric Coissac committed Mar 14, 2015
  
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10 Mar, 2015 2 commits
- Add dependency to ipython · 230be1c0
  Eric Coissac committed Mar 10, 2015
  
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- Switch to the version 1.1.2 · 9fa9d23c
```
Add the exports of the doc in html epub and man pages
Modify the obitool script to setup the path to export/bin
```
  Eric Coissac committed Mar 10, 2015
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06 Mar, 2015 1 commit
- in obitaxonomy, fixed a typo, and a problem when adding taxa from a file with an associated path · bb4170df
  Celine Mercier committed Mar 06, 2015
  
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05 Mar, 2015 1 commit
- --no commit message · 9893dba6
  Eric Coissac committed Mar 05, 2015
  
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