Commits · a186bf439cd5e8aaad19b49d73421096c708f5e6 · OBITools / OBITools

06 Jul, 2016 1 commit
- Small changes on distutils.ext · a186bf43
  Eric Coissac authored Jul 06, 2016
  
  a186bf43
28 Jun, 2016 3 commits
- Rename members of the DNA profil strucuture to potentiel avoid a compile · b8dc49ef
  Eric Coissac authored Jun 28, 2016
```
bug on windows cygwin
```
  b8dc49ef
- Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools.git · 140f2697
  Eric Coissac authored Jun 28, 2016
  
  140f2697
- Remove a debug trace in the installer · d96cf371
  Eric Coissac authored Jun 28, 2016
  
  d96cf371
16 Jun, 2016 1 commit
- Fixed a potential bug with the parsing of taxonomic paths when using · 20f1c1d3
  Celine Mercier authored Jun 16, 2016
```
obitaxonomy after obiaddtaxids on a general UNITE database
```
  20f1c1d3
27 May, 2016 4 commits
- Patch the obitool url on metabarcoding.org · f32ca9e9
  Eric Coissac authored May 27, 2016
  
  f32ca9e9
- Switch to version 1.2.6 · a06e7910
  Eric Coissac authored May 27, 2016
  
  a06e7910
- Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools.git · 0e2c4861
  Eric Coissac authored May 27, 2016
  
  0e2c4861
- Numbering version 1.2.5 · 950bae88
  Celine Mercier authored May 27, 2016
  
  950bae88
26 May, 2016 2 commits
- Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools.git · 683f3b5b
  Celine Mercier authored May 26, 2016
  
  683f3b5b
- Fixed a bug in obitaxonomy sometimes triggering an error when adding a · 54901447
  Celine Mercier authored May 26, 2016
```
new taxon from a file. Also now checks if taxon already in taxonomy.
```
  54901447
07 Apr, 2016 1 commit
- for cython to version 0.23.5 the latest 0.23 version · 42a3f984
  Eric Coissac authored Apr 07, 2016
  
  42a3f984
06 Apr, 2016 2 commits
- patch a bug in the sequence counting of obiselect · c395d762
  Eric Coissac authored Apr 06, 2016
  
  c395d762
- Set the Cython required version to 0.23 because of a bug in the 0.24 · b2d2346e
  Eric Coissac authored Apr 06, 2016
```
version
```
  b2d2346e
04 Apr, 2016 2 commits
- Switch to version 1.2.3 · ffb33f61
  Eric Coissac authored Apr 04, 2016
  
  ffb33f61
- Fixed major bug with -f UNITE_FULL option of obiaddtaxids · adbeac96
  Celine Mercier authored Apr 04, 2016
  
  adbeac96
30 Mar, 2016 1 commit
- Merge branch 'master' of git.metabarcoding.org:obitools/obitools · 4aac47e6
  Celine Mercier authored Mar 30, 2016
  
  4aac47e6
17 Mar, 2016 1 commit
- Fixed typo in obiaddtaxids documentation · 2028c69b
  Celine Mercier authored Mar 17, 2016
  
  2028c69b
12 Jan, 2016 2 commits
- Switch to version 1.2.2 · 2649cd26
  Eric Coissac authored Jan 12, 2016
  
  2649cd26
- Add capacity to filter on merged sequences · 46b446f0
  Eric Coissac authored Jan 12, 2016
  
  46b446f0
08 Jan, 2016 1 commit
- Fixes #20 and several other bugs related to that function · 6208cbee
  Celine Mercier authored Jan 08, 2016
  
  6208cbee
27 Oct, 2015 5 commits
- Patch a bug related to the -E et -M options · 1d4c3f99
  Eric Coissac authored Oct 27, 2015
  
  1d4c3f99
- Switch the version number to 1.2.1 · ba30e74d
  Eric Coissac authored Oct 27, 2015
  
  ba30e74d
- Modify the action of the -M option to fit the documentation · 0e8b97ca
  Eric Coissac authored Oct 27, 2015
  
  0e8b97ca
- Change the ecotag doc according to the new -M option · a95ae512
  Eric Coissac authored Oct 27, 2015
  
  a95ae512
- Patch bug in the -E option of ecotag and add the -M option to limit the · 0e2f8598
  Eric Coissac authored Oct 27, 2015
```
action of the -E option 
```
  0e2f8598
20 Oct, 2015 1 commit
- Add a first version of the obisubset tool and tag the version 1.2.0 · 23717f58
  Eric Coissac authored Oct 20, 2015
  
  23717f58
02 Oct, 2015 1 commit

Change the way ecoPCRDB are written by obitools. If the obitools is · fdeaf595

Eric Coissac authored Oct 02, 2015

called with several sequence files as input when the ecoPCRDB is
requested as output format, the sequences are splitted in several sdx
files

fdeaf595

03 Aug, 2015 2 commits
- Switch to version 1.1.22 · 343d9ec6
  Eric Coissac authored Aug 03, 2015
  
  343d9ec6
- Patch a wrong import in the file · 7a993ec8
  Eric Coissac authored Aug 03, 2015
  
  7a993ec8
20 Jul, 2015 1 commit
- fixed a problem with the progress bar in obiselect when there is more · 6170fac0
  celinemercier authored Jul 20, 2015
```
than one category
```
  6170fac0
13 Jul, 2015 1 commit
- Switch to the version 1.1.21 · 764ee27c
  Eric Coissac authored Jul 13, 2015
  
  764ee27c
11 Jul, 2015 1 commit
- Add a small work around patch for the --skip and --only options in · 18d87aa1
  Eric Coissac authored Jul 11, 2015
```
illuminapairedend
```
  18d87aa1
03 Jul, 2015 4 commits
- Tag the version 1.1.20 · 1c91c27e
  Eric Coissac authored Jul 03, 2015
  
  1c91c27e
- Patch two small print bug in the new ecotag · 22d343b4
  Eric Coissac authored Jul 03, 2015
  
  22d343b4
- Add docuentation for the new options and an option to manage the ecotag · 2af94b9d
  Eric Coissac authored Jul 03, 2015
```
cache size
```
  2af94b9d
- Add two general options for limiting the analysis of a file to only a · aa064dda
  Eric Coissac authored Jul 03, 2015
```
sub-part of the data:

   - --skip <N>
   - --only <N>
   
They respectively allow to first skip the N first sequences, and to
analysize only the <N> next sequences.
```
  aa064dda
02 Jul, 2015 1 commit
- Add a --minimum-circle option to ecotag and a cache on the self · f38ccae6
  Eric Coissac authored Jul 02, 2015
```
alignment scores of 1000000 of pairwise scores
```
  f38ccae6
12 Jun, 2015 1 commit
- Closes #9 : adds a parser in obiaddtaxids for the UNITE 'general FASTA · b9988181
  Celine Mercier authored Jun 12, 2015
```
release' format
```
  b9988181
11 Jun, 2015 1 commit
- updated the UNITE parser of obiaddtaxids · df093b3f
  Celine Mercier authored Jun 11, 2015
  
  df093b3f