Commits · 2af94b9da7bb79f651531c210fe70db1f815915d · OBITools / OBITools · GitLab

03 Jul, 2015 2 commits
- Add docuentation for the new options and an option to manage the ecotag · 2af94b9d
```
cache size
```
  Eric Coissac committed Jul 03, 2015
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- Add two general options for limiting the analysis of a file to only a · aa064dda
```
sub-part of the data:

   - --skip <N>
   - --only <N>
   
They respectively allow to first skip the N first sequences, and to
analysize only the <N> next sequences.
```
  Eric Coissac committed Jul 03, 2015
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02 Jul, 2015 1 commit
- Add a --minimum-circle option to ecotag and a cache on the self · f38ccae6
```
alignment scores of 1000000 of pairwise scores
```
  Eric Coissac committed Jul 02, 2015
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12 Jun, 2015 1 commit
- Closes #9 : adds a parser in obiaddtaxids for the UNITE 'general FASTA · b9988181
```
release' format
```
  Celine Mercier committed Jun 12, 2015
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11 Jun, 2015 1 commit
- updated the UNITE parser of obiaddtaxids · df093b3f
  Celine Mercier committed Jun 11, 2015
  
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02 Jun, 2015 4 commits
- Switch to the 1.1.18 version · 9ba67985
  Eric Coissac committed Jun 02, 2015
  
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- Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools.git · f74aeff0
  Eric Coissac committed Jun 02, 2015
  
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- tag the 1.1.17 version · b9fa718a
  Eric Coissac committed Jun 02, 2015
  
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- Patch the installer · 51a7ecde
  Eric Coissac committed Jun 02, 2015
  
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01 Jun, 2015 3 commits
- fixing a documentation problem (issue #3 ) · 6bf6cc66
  Celine Mercier committed Jun 01, 2015
  
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- modified the obisilva script to deal with version names containing dots, · 191af966
```
e.g. "119.1"
```
  Celine Mercier committed Jun 01, 2015
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- switching branch OBITools-1.01 to master · 429fbbb6
  Celine Mercier committed Jun 01, 2015
  
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22 May, 2015 1 commit
- Fixes #3 · 18c3a7dc
  Celine Mercier committed May 22, 2015
  
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28 Apr, 2015 2 commits
- Switch to version 1.1.16 · 83b60ab7
  Eric Coissac committed Apr 28, 2015
  
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- Patch a bug in the getTaxid function · 8f617231
  Eric Coissac committed Apr 28, 2015
  
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16 Apr, 2015 8 commits
- --no commit message · 21ac43ca
  Eric Coissac committed Apr 16, 2015
  
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- --no commit message · 6be099b8
  Eric Coissac committed Apr 16, 2015
  
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- --no commit message · 37d24feb
  Eric Coissac committed Apr 16, 2015
  
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- --no commit message · ee1063ed
  Eric Coissac committed Apr 16, 2015
  
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- --no commit message · 6bd5407a
  Eric Coissac committed Apr 16, 2015
  
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- --no commit message · dd5fbb02
  Eric Coissac committed Apr 16, 2015
  
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- Use setuptools instead of distutils as much as possible · 3a824692
  Eric Coissac committed Apr 16, 2015
  
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- Resolve dependency with cython by making a temporary install if needed · edfa796c
  Eric Coissac committed Apr 16, 2015
  
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15 Apr, 2015 4 commits
- Switch to version 1.1.6 · 704dbd50
  Eric Coissac committed Apr 15, 2015
  
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- Switch to version 1.1.6 · bd32b9f4
  Eric Coissac committed Apr 15, 2015
  
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- Add a local copy of setuptools · 4547dd49
  Eric Coissac committed Apr 15, 2015
  
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- Try to solve dependencies with sphinx at the first install · 48dc9497
  Eric Coissac committed Apr 15, 2015
  
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21 Mar, 2015 2 commits
- Change the install documentation · 2614654b
  Eric Coissac committed Mar 21, 2015
  
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- Debug the reading of gziped files, change the doc of obipr2 and obisilva · 6bfec50f
  Eric Coissac committed Mar 21, 2015
  
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14 Mar, 2015 1 commit
- --no commit message · 28dad843
  Eric Coissac committed Mar 14, 2015
  
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10 Mar, 2015 3 commits
- Add dependency to ipython · 230be1c0
  Eric Coissac committed Mar 10, 2015
  
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- Switch to the version 1.1.2 · 1ca1fa0b
```
Add the exports of the doc in html epub and man pages
Modify the obitool script to setup the path to export/bin
```
  Eric Coissac committed Mar 10, 2015
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- Switch to the version 1.1.2 · 9fa9d23c
```
Add the exports of the doc in html epub and man pages
Modify the obitool script to setup the path to export/bin
```
  Eric Coissac committed Mar 10, 2015
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06 Mar, 2015 1 commit
- in obitaxonomy, fixed a typo, and a problem when adding taxa from a file with an associated path · bb4170df
  Celine Mercier committed Mar 06, 2015
  
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05 Mar, 2015 2 commits
- --no commit message · 9893dba6
  Eric Coissac committed Mar 05, 2015
  
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- New realease of obitools including a first version of obipr2 and obisilva · 173dde28
  Eric Coissac committed Mar 05, 2015
  
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02 Mar, 2015 1 commit
- Switch to the version 1.1 of obitools · 49e3eb3c
  Eric Coissac committed Mar 02, 2015
  
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23 Feb, 2015 1 commit
- in obitaxonomy, fixed a problem when adding taxa from file with an associated path · f40c2f52
  Celine Mercier committed Feb 23, 2015
  
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20 Feb, 2015 1 commit
- Create a new major version · c0eb996d
  Eric Coissac committed Feb 20, 2015
  
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10 Feb, 2015 1 commit
- --no commit message · 23d7c218
  Frédéric Boyer committed Feb 10, 2015
  
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