Commit d21b90e5 by Aurélie Bonin

--no commit message

parent e29c7345
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The minimum function is applied to the values used to define categories (see option `-c`).
Sequences will be ordered according to the distance of their values to the minimum value.
.. cmdoption:: -M, --max select sequence in each group maximizing the function
.. cmdoption:: -M, --max
Sets the function used for scoring sequence records into a group to the maximum function.
The maximum function is applied to the values used to define categories (see option `-c`).
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.. cmdoption:: -f FUNCTION, --function=FUNCTION
Sets the function used for scoring sequence records into a group to a user define function.
he user define function is declared using `Python` syntax. Attribute keys can be used as variables.
The user define function is declared using `Python` syntax. Attribute keys can be used as variables.
An extra `sequence` variable representing the full sequence record is available. If option for
loading a taxonomy database is provided, a `taxonomy` variable is also available.
The function is estimated for each sequence record and the minimum value of this function in
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#!/usr/local/bin/python
'''
:py:mod:`obihead`: Extracts the first sequence records
:py:mod:`obihead`: extracts the first sequence records
======================================================
.. codeauthor:: Eric Coissac <eric.coissac@metabarcoding.org>
:py:mod:`obihead` command is in some way analog to the standard Unix `head` command.
It selects the head of :doc:`a sequence file <../formats>`.
It selects the head of a sequence file.
But instead of working text line by text line as the standard Unix tool,
selection is done at the sequence record level. You can specify the number of sequence records
to select.
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#!/usr/local/bin/python
'''
:py:mod:`obisample`: Randomly resamples sequence records
:py:mod:`obisample`: randomly resamples sequence records
========================================================
.. codeauthor:: Eric Coissac <eric.coissac@metabarcoding.org>
......
#!/usr/local/bin/python
"""
:py:mod:`obiselect` : Selects representative sequence records
:py:mod:`obiselect` : selects representative sequence records
=============================================================
.. codeauthor:: Eric Coissac <eric.coissac@metabarcoding.org>
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