patch a bug in the sequence counting of obiselect

c395d762 · Eric Coissac · b2d2346e · c395d762
Commit c395d762 authored Apr 06, 2016 by Eric Coissac
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Showing with 5 additions and 2 deletions

obiselect.py src/obiselect.py +5 -2

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--- a/src/obiselect.py
+++ b/src/obiselect.py
@@ -231,8 +231,11 @@ if __name__ == '__main__':
    
                for seq in seqs[1:]:
                    
-                    s['count']+=seq['count']
-                    
+                    if 'count' in seq:
+                        s['count']+=seq['count']
+                    else:
+                        s['count']+=1
+                        
                    for key in mergedKey:
                        if key=='taxid' and mergeIds:
                            if 'taxid_dist' in seq: