Commit b8dc49ef by Eric Coissac

Rename members of the DNA profil strucuture to potentiel avoid a compile

bug on windows cygwin
parent 140f2697
......@@ -47,10 +47,10 @@ cdef class _MemIntArray:
cdef class DNAProfile:
cdef dnaprofile_t* profile
cdef _MemIntArray _A
cdef _MemIntArray _C
cdef _MemIntArray _G
cdef _MemIntArray _T
cdef _MemIntArray _baseA
cdef _MemIntArray _baseC
cdef _MemIntArray _baseG
cdef _MemIntArray _baseT
cdef _MemIntArray _Og
cdef _MemIntArray _Eg
......
......@@ -85,14 +85,14 @@ cdef class DNAProfile:
cdef void _initLetter(self):
cdef dnaprofile_t* profile = self.profile
self._A = _MemIntArray()
self._A.initialize(profile.A ,profile.length)
self._C = _MemIntArray()
self._C.initialize(profile.C ,profile.length)
self._G = _MemIntArray()
self._G.initialize(profile.G ,profile.length)
self._T = _MemIntArray()
self._T.initialize(profile.T ,profile.length)
self._baseA = _MemIntArray()
self._baseA.initialize(profile.A ,profile.length)
self._baseC = _MemIntArray()
self._baseC.initialize(profile.C ,profile.length)
self._baseG = _MemIntArray()
self._baseG.initialize(profile.G ,profile.length)
self._baseT = _MemIntArray()
self._baseT.initialize(profile.T ,profile.length)
self._Og = _MemIntArray()
self._Og.initialize(profile.Og,profile.length)
self._Eg = _MemIntArray()
......@@ -242,19 +242,19 @@ cdef class DNAProfile:
property A:
def __get__(self):
return self._A
return self._baseA
property C:
def __get__(self):
return self._C
return self._baseC
property G:
def __get__(self):
return self._G
return self._baseG
property T:
def __get__(self):
return self._T
return self._baseT
property Og:
def __get__(self):
......
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