Skip to content
Projects
Groups
Snippets
Help
This project
Loading...
Sign in / Register
Toggle navigation
O
OBITools
Overview
Overview
Details
Activity
Cycle Analytics
Repository
Repository
Files
Commits
Branches
Tags
Contributors
Graph
Compare
Charts
Issues
25
Issues
25
List
Board
Labels
Milestones
Merge Requests
0
Merge Requests
0
Wiki
Wiki
Members
Members
Collapse sidebar
Close sidebar
Activity
Graph
Charts
Create a new issue
Commits
Issue Boards
Open sidebar
OBITools
OBITools
Commits
b24f9937
Commit
b24f9937
authored
Jul 28, 2016
by
Eric Coissac
Browse files
Options
Browse Files
Download
Email Patches
Plain Diff
Remove some false error warning
parent
e0bf25d7
Hide whitespace changes
Inline
Side-by-side
Showing
2 changed files
with
29 additions
and
29 deletions
+29
-29
_lcs.pyx
src/obitools/align/_lcs.pyx
+1
-1
_fastq.pyx
src/obitools/fastq/_fastq.pyx
+28
-28
No files found.
src/obitools/align/_lcs.pyx
View file @
b24f9937
...
...
@@ -24,7 +24,7 @@ cdef class LCS(DynamicProgramming):
return self._opengap
property extgap:
def __get__(self):
def __get__(self):
# @DuplicatedSignature
return self._extgap
cdef double matchScore(self,int h, int v):
...
...
src/obitools/fastq/_fastq.pyx
View file @
b24f9937
...
...
@@ -84,12 +84,12 @@ cpdef array.array[double] fastqQualitySolexaDecoder(char* qualstring):
return fastqQualityDecoder(qualstring,64)
cpdef array.array[double] qualityToSolexaError(array.array quality):
cdef int i=0
cdef int i=0
# @DuplicatedSignature
cdef int lq
cdef double proba
cdef object oaddresse,olength
cdef int length
cdef double* bdouble
cdef object oaddresse,olength
# @DuplicatedSignature
cdef int length
# @DuplicatedSignature
cdef double* bdouble
# @DuplicatedSignature
(oaddress,olength)=quality.buffer_info()
bdouble=<double*><unsigned long int>oaddress
...
...
@@ -102,12 +102,12 @@ cpdef array.array[double] qualityToSolexaError(array.array quality):
return quality
cpdef array.array[double] qualityToSangerError(array.array quality):
cdef int i=0
cdef int lq
cdef double proba
cdef object oaddresse,olength
cdef int length
cdef double* bdouble
cdef int i=0
# @DuplicatedSignature
cdef int lq
# @DuplicatedSignature
cdef double proba
# @DuplicatedSignature
cdef object oaddresse,olength
# @DuplicatedSignature
cdef int length
# @DuplicatedSignature
cdef double* bdouble
# @DuplicatedSignature
(oaddress,olength)=quality.buffer_info()
bdouble=<double*><unsigned long int>oaddress
...
...
@@ -120,12 +120,12 @@ cpdef array.array[double] qualityToSangerError(array.array quality):
return quality
cpdef array.array[double] errorToSangerQuality(array.array quality):
cdef int i=0
cdef int lq
cdef double proba
cdef object oaddresse,olength
cdef int length
cdef double* bdouble
cdef int i=0
# @DuplicatedSignature
cdef int lq
# @DuplicatedSignature
cdef double proba
# @DuplicatedSignature
cdef object oaddresse,olength
# @DuplicatedSignature
cdef int length
# @DuplicatedSignature
cdef double* bdouble
# @DuplicatedSignature
(oaddress,olength)=quality.buffer_info()
bdouble=<double*><unsigned long int>oaddress
...
...
@@ -138,12 +138,12 @@ cpdef array.array[double] errorToSangerQuality(array.array quality):
return quality
cpdef array.array[double] solexaToSangerQuality(array.array quality):
cdef int i=0
cdef int lq
cdef double proba
cdef object oaddresse,olength
cdef int length
cdef double* bdouble
cdef int i=0
# @DuplicatedSignature
cdef int lq
# @DuplicatedSignature
cdef double proba
# @DuplicatedSignature
cdef object oaddresse,olength
# @DuplicatedSignature
cdef int length
# @DuplicatedSignature
cdef double* bdouble
# @DuplicatedSignature
(oaddress,olength)=quality.buffer_info()
bdouble=<double*><unsigned long int>oaddress
...
...
@@ -156,12 +156,12 @@ cpdef array.array[double] solexaToSangerQuality(array.array quality):
return quality
cpdef bytes errorToSangerFastQStr(array.array quality):
cdef int i=0
cdef int lq
cdef double proba
cdef object oaddresse,olength
cdef int length
cdef double* bdouble
cdef int i=0
# @DuplicatedSignature
cdef int lq
# @DuplicatedSignature
cdef double proba
# @DuplicatedSignature
cdef object oaddresse,olength
# @DuplicatedSignature
cdef int length
# @DuplicatedSignature
cdef double* bdouble
# @DuplicatedSignature
cdef char* result
cdef bytes code
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment