Commit b24f9937 by Eric Coissac

Remove some false error warning

parent e0bf25d7
......@@ -24,7 +24,7 @@ cdef class LCS(DynamicProgramming):
return self._opengap
property extgap:
def __get__(self):
def __get__(self): # @DuplicatedSignature
return self._extgap
cdef double matchScore(self,int h, int v):
......
......@@ -84,12 +84,12 @@ cpdef array.array[double] fastqQualitySolexaDecoder(char* qualstring):
return fastqQualityDecoder(qualstring,64)
cpdef array.array[double] qualityToSolexaError(array.array quality):
cdef int i=0
cdef int i=0 # @DuplicatedSignature
cdef int lq
cdef double proba
cdef object oaddresse,olength
cdef int length
cdef double* bdouble
cdef object oaddresse,olength # @DuplicatedSignature
cdef int length # @DuplicatedSignature
cdef double* bdouble # @DuplicatedSignature
(oaddress,olength)=quality.buffer_info()
bdouble=<double*><unsigned long int>oaddress
......@@ -102,12 +102,12 @@ cpdef array.array[double] qualityToSolexaError(array.array quality):
return quality
cpdef array.array[double] qualityToSangerError(array.array quality):
cdef int i=0
cdef int lq
cdef double proba
cdef object oaddresse,olength
cdef int length
cdef double* bdouble
cdef int i=0 # @DuplicatedSignature
cdef int lq # @DuplicatedSignature
cdef double proba # @DuplicatedSignature
cdef object oaddresse,olength # @DuplicatedSignature
cdef int length # @DuplicatedSignature
cdef double* bdouble # @DuplicatedSignature
(oaddress,olength)=quality.buffer_info()
bdouble=<double*><unsigned long int>oaddress
......@@ -120,12 +120,12 @@ cpdef array.array[double] qualityToSangerError(array.array quality):
return quality
cpdef array.array[double] errorToSangerQuality(array.array quality):
cdef int i=0
cdef int lq
cdef double proba
cdef object oaddresse,olength
cdef int length
cdef double* bdouble
cdef int i=0 # @DuplicatedSignature
cdef int lq # @DuplicatedSignature
cdef double proba # @DuplicatedSignature
cdef object oaddresse,olength # @DuplicatedSignature
cdef int length # @DuplicatedSignature
cdef double* bdouble # @DuplicatedSignature
(oaddress,olength)=quality.buffer_info()
bdouble=<double*><unsigned long int>oaddress
......@@ -138,12 +138,12 @@ cpdef array.array[double] errorToSangerQuality(array.array quality):
return quality
cpdef array.array[double] solexaToSangerQuality(array.array quality):
cdef int i=0
cdef int lq
cdef double proba
cdef object oaddresse,olength
cdef int length
cdef double* bdouble
cdef int i=0 # @DuplicatedSignature
cdef int lq # @DuplicatedSignature
cdef double proba # @DuplicatedSignature
cdef object oaddresse,olength # @DuplicatedSignature
cdef int length # @DuplicatedSignature
cdef double* bdouble # @DuplicatedSignature
(oaddress,olength)=quality.buffer_info()
bdouble=<double*><unsigned long int>oaddress
......@@ -156,12 +156,12 @@ cpdef array.array[double] solexaToSangerQuality(array.array quality):
return quality
cpdef bytes errorToSangerFastQStr(array.array quality):
cdef int i=0
cdef int lq
cdef double proba
cdef object oaddresse,olength
cdef int length
cdef double* bdouble
cdef int i=0 # @DuplicatedSignature
cdef int lq # @DuplicatedSignature
cdef double proba # @DuplicatedSignature
cdef object oaddresse,olength # @DuplicatedSignature
cdef int length # @DuplicatedSignature
cdef double* bdouble # @DuplicatedSignature
cdef char* result
cdef bytes code
......
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