Commit 8d71aa2d by Eric Coissac

--no commit message

parent 0c022eb4
......@@ -203,7 +203,7 @@ latex_logo = 'OBITools.png'
# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
latex_use_parts = False
latex_use_parts = True
# Additional stuff for the LaTeX preamble.
#latex_preamble = ''
......
......@@ -143,36 +143,11 @@ file, but .fq and .fastq, are commonly used.
See also
--------
- :ref:`fasta <fasta-classicalt>`__
- :ref:`fasta <classical-fasta>`
References
----------
.. raw:: mediawiki
{{reflist|2}}
External links
--------------
- `MAQ <http://maq.sourceforge.net/fastq.shtml>`__ webpage discussing
FASTQ variants
- `Galaxy fastq
tools <http://bitbucket.org/galaxy/galaxy-central/src/tip/tools/fastq/>`__
- `Fastx toolkit <http://hannonlab.cshl.edu/fastx_toolkit/>`__
collection of command line tools for Short-Reads FASTA/FASTQ files
preprocessing
- `Fastqc <http://www.bioinformatics.bbsrc.ac.uk/projects/fastqc/>`__
quality control tool for high throughput sequence data
- `PRINSEQ <http://prinseq.sourceforge.net/>`__ can be used for QC and
to filter, reformat, or trim sequence data (web-based and command
line versions)
.. raw:: mediawiki
{{DEFAULTSORT:Fastq Format}}
.. [1]
Cock et al (2009) The Sanger FASTQ file format for sequences with
quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids
......
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