Commit 7a993ec8 by Eric Coissac

Patch a wrong import in the file

parent 6170fac0
......@@ -33,10 +33,6 @@ from obitools.format.sequence import skipOnErrorIterator, skipfirst, only
from obitools import BioSequence
from obitools.utils import FakeFile
from glob import glob
from test.test_compiler import Toto
def binarySequenceIterator(lineiterator):
f = FakeFile(lineiterator)
......@@ -263,9 +259,9 @@ def autoEntriesIterator(options):
raise AssertionError,'file is not in fasta, fasta, embl, genbank or ecoPCR format'
if reader==binarySequenceIterator:
input = binarySequenceIterator(lineiterator)
input = binarySequenceIterator(lineiterator) # @ReservedAssignment
else:
input = reader(chain([first],lineiterator))
input = reader(chain([first],lineiterator)) # @ReservedAssignment
return input
......@@ -325,7 +321,7 @@ def autoEntriesIterator(options):
def sequenceWriterGenerator(options,output=sys.stdout):
class SequenceWriter:
def __init__(self,options,file=sys.stdout):
def __init__(self,options,file=sys.stdout): # @ReservedAssignment
self._format=None
self._file=file
self._upper=options.uppercase
......@@ -350,7 +346,7 @@ def sequenceWriterGenerator(options,output=sys.stdout):
sys.exit(0)
class BinaryWriter:
def __init__(self,options,file=sys.stdout):
def __init__(self,options,file=sys.stdout): # @ReservedAssignment
self._file=file
self._file.write("#!Pickle\n")
def put(self,seq):
......
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