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doc/sphinx/source/scripts/ecoPCR.rst

@@ -158,7 +158,7 @@ Examples
 			maximum amplified sequence lengths (excluding primers) are 50 bp and 500 bp, respectively. The 
 			primers used are TCACAGACCTGTTATTGC and TYTGTCTGSTTRATTSCG (possibility to use 
 			:doc:`IUPAC codes <../iupac>`). They amplify a short portion of the nuclear 18S gene. The 
-			results are saved in the ``mysequence.ecopcr`` file.
+			results are saved in the *mysequence.ecopcr* file.
 	   
 	
 	
@@ -168,14 +168,14 @@ Examples
 	    
 	       			> ecoPCR -d mydatabase -e 2  -l 80 -L 120 -D 50 -r 7742 \
 	       			  TTAGATACCCCACTATG#C# TAGAACAGGCTCCTCTA#G# > mysequences.ecopcr
-
+	     
             Launches an *in silico* PCR on mydatabase (see :doc:`obiconvert <./obiconvert>` for a description
             of the database format), with a maximum of two mismatches for each primer, but with a perfect match 
-            on the last two nucleotides of the 3' end of each primer (a perfect match can be enforced by adding 
+            on the last two nucleotides	of the 3' end of each primer (a perfect match can be enforced by adding 
             a '#' after the considered nucleotide). The minimum and maximum amplified sequence lengths (excluding 
             primers) are 80 bp and 120 bp, respectively. The ``-D`` option keeps 50 nucleotides on each side of 
             the *in silico* amplified sequences, (including the amplified DNA fragment plus the two target 
-            sequences of the primers). The primers used are TTAGATACCCCACTATGC and TAGAACAGGCTCCTCTAG. They 
+            sequences of the primers). The primers used	are TTAGATACCCCACTATGC and TAGAACAGGCTCCTCTAG. They 
             amplify a short portion of the mitochondrial 12S gene. The ``-r`` option restricts the search to 
             vertebrates (7742 is the :doc:`taxid <../attributes/taxid>` of vertebrates). The results are saved 
             in the ``mysequence.ecopcr`` file.