Commit 518c8cac by Eric Coissac

Add licence and setup.py script to install OBITools

parent 63281bea
[epydoc] # Epydoc section marker (required by ConfigParser)
# The list of objects to document. Objects can be named using
# dotted names, module filenames, or package directory names.
# Alases for this option include "objects" and "values".
modules: src/obitools
# The type of output that should be generated. Should be one
# of: html, text, latex, dvi, ps, pdf.
output: html
# The path to the output directory. May be relative or absolute.
target: doc/html/api
# An integer indicating how verbose epydoc should be. The default
# value is 0; negative values will supress warnings and errors;
# positive values will give more verbose output.
verbosity: 0
# A boolean value indicating that Epydoc should show a tracaback
# in case of unexpected error. By default don't show tracebacks
debug: 0
# If True, don't try to use colors or cursor control when doing
# textual output. The default False assumes a rich text prompt
simple-term: 0
### Generation options
# The default markup language for docstrings, for modules that do
# not define __docformat__. Defaults to epytext.
# default : epytext
docformat: javadoc
# Whether or not parsing should be used to examine objects.
parse: yes
# Whether or not introspection should be used to examine objects.
introspect: yes
# Don't examine in any way the modules whose dotted name match this
# regular expression pattern.
#exclude
# Don't perform introspection on the modules whose dotted name match this
# regular expression pattern.
#exclude-introspect
# Don't perform parsing on the modules whose dotted name match this
# regular expression pattern.
#exclude-parse
# The format for showing inheritance objects.
# It should be one of: 'grouped', 'listed', 'included'.
inheritance: listed
# Whether or not to inclue private variables. (Even if included,
# private variables will be hidden by default.)
private: yes
# Whether or not to list each module's imports.
imports: no
# Whether or not to include syntax highlighted source code in
# the output (HTML only).
sourcecode: yes
# Whether or not to includea a page with Epydoc log, containing
# effective option at the time of generation and the reported logs.
include-log: yes
### Output options
# The documented project's name.
name: OBITools
# The CSS stylesheet for HTML output. Can be the name of a builtin
# stylesheet, or the name of a file.
css: white
# The documented project's URL.
url: http://www.grenoble.prabi.fr/trac/OBITools
# HTML code for the project link in the navigation bar. If left
# unspecified, the project link will be generated based on the
# project's name and URL.
#link: <a href="somewhere">My Cool Project</a>
# The "top" page for the documentation. Can be a URL, the name
# of a module or class, or one of the special names "trees.html",
# "indices.html", or "help.html"
#top: os.path
# An alternative help file. The named file should contain the
# body of an HTML file; navigation bars will be added to it.
#help: my_helpfile.html
# Whether or not to include a frames-based table of contents.
frames: yes
# Whether each class should be listed in its own section when
# generating LaTeX or PDF output.
separate-classes: no
### API linking options
# Define a new API document. A new interpreted text role
# will be created
#external-api: epydoc
# Use the records in this file to resolve objects in the API named NAME.
#external-api-file: epydoc:api-objects.txt
# Use this URL prefix to configure the string returned for external API.
#external-api-root: epydoc:http://epydoc.sourceforge.net/api
### Graph options
# The list of graph types that should be automatically included
# in the output. Graphs are generated using the Graphviz "dot"
# executable. Graph types include: "classtree", "callgraph",
# "umlclass". Use "all" to include all graph types
graph: all
# The path to the Graphviz "dot" executable, used to generate
# graphs.
dotpath: /usr/local/graphviz-2.12/bin/dot
# The name of one or more pstat files (generated by the profile
# or hotshot module). These are used to generate call graphs.
pstat: profile.out
# Specify the font used to generate Graphviz graphs.
# (e.g., helvetica or times).
graph-font: Helvetica
# Specify the font size used to generate Graphviz graphs.
graph-font-size: 10
### Return value options
# The condition upon which Epydoc should exit with a non-zero
# exit status. Possible values are error, warning, docstring_warning
#fail-on: error
#! /usr/bin/env python
#
# Edward Loper's API Documentation Generation Tool
#
# Created [05/27/01 09:04 PM]
# Edward Loper
#
from distutils.core import setup
import re, sys
import glob
from os import path
def findPackage(root,base=None):
modules=[]
if base is None:
base=[]
for module in (path.basename(path.dirname(x))
for x in glob.glob(path.join(root,'*','__init__.py'))):
modules.append('.'.join(base+[module]))
modules.extend(findPackage(path.join(root,module),base+[module]))
return modules
VERSION = '0.1.0'
AUTHOR = 'Eric Coissac'
EMAIL = 'eric.coissac@inrialpes.fr'
URL = 'www.grenoble.prabi.fr/trac/OBITools'
LICENSE = 'CeCILL-V2'
SRC = 'src'
SCRIPTS = glob.glob('%s/*.py' % SRC)
SCRIPTS.append('src/fastaComplement')
setup(name="OBITools",
description="Scripts and library for sequence analysis",
version=VERSION,
author=AUTHOR,
author_email=EMAIL,
license=LICENSE,
url=URL,
scripts=SCRIPTS,
package_dir = {'': SRC},
packages=findPackage(SRC))
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