Commit 444e7179 by Frédéric Boyer

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parent 829efc77
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.. codeauthor:: Eric Coissac <eric.coissac@metabarcoding.org>
The :py:mod:`ecotaxstat` command requires two parameters : an *ecoPCR* formatted database (specified
with the `-d` option, (see :ref:`obiconvert` for a description of the database format) and an ecoPCR
output (ideally computed using the specified ecoPCR database).
with the `-d` option, (see :doc:`obiconvert <obiconvert>` for a description of the database format)
and an ecoPCR output (ideally computed using the specified ecoPCR database).
The command outputs, for every rank, the coverage (Bc) of the ecoPCR output. The coverage (Bc) is the
fraction of *taxids* that have a sequence in the database and have also have a sequence in the ecoPCR
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