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coissac created page: home authored by Eric Coissac's avatar Eric Coissac
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They are highly related with the following softwares:
`    - `[`ecoPCR`](http://www.grenoble.prabi.fr/trac/ecoPCR)` for `[`DNA` `Metabarcoding`](http://metabarcoding.org)` primers in silico evaluation.`
`    - `[`ecoPrimers`](http://www.grenoble.prabi.fr/trac/ecoPrimers)` for `[`DNA` `Metabarcoding`](http://metabarcoding.org)` primers design.`
`    - `[`sumatra` `and` `sumaclust`](http://metabarcoding.org/sumatra)` for fast alignment and clustering of NGS reads.`
    - [ecoPCR](http://www.grenoble.prabi.fr/trac/ecoPCR) for [DNA Metabarcoding](http://metabarcoding.org) primers in silico evaluation.
    - [ecoPrimers](http://www.grenoble.prabi.fr/trac/ecoPrimers) for [DNA Metabarcoding](http://metabarcoding.org) primers design.
    - [sumatra and sumaclust](http://metabarcoding.org/sumatra) for fast alignment and clustering of NGS reads.
The programs evolved with our needs. They mainly provide facilities to manipulate sequence files in [Fasta](http://en.wikipedia.org/wiki/FASTA_format) and [FastQ](http://en.wikipedia.org/wiki/FASTQ_format) format. Other input formats like [genbank](http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html) or [embl](http://en.wikipedia.org/wiki/European_Nucleotide_Archive) are supported too as well as formats related to [ecoPCR](http://www.grenoble.prabi.fr/trac/ecoPCR).
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