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  • #60

Closed
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Opened Jan 18, 2021 by Amalia Mailli@aletia03

Trouble installing OBITools

Hello,

I have been having issues installing OBITools. More specifically, after initiating the get-obitools,py command, I get this error message:

Successfully downloaded OBITools Cleaning up... Installing OBITools (1.2.13) in serenity mode Look for package virtualenv (>=1.11.0) : ok version 20.3.1 installed Traceback (most recent call last): File "setup.py", line 37, in <module> serenity=serenity_mode(PACKAGE,VERSION) File "distutils.ext/obidistutils/serenity/__init__.py", line 109, in serenity_mode serenity_snake(args.virtual,package,version) File "distutils.ext/obidistutils/serenity/__init__.py", line 58, in serenity_snake virtualpython=serenity_virtualenv(envname,package,version,minversion=minversion) File "distutils.ext/obidistutils/serenity/virtual.py", line 125, in serenity_virtualenv virtualenv.create_environment(envname) AttributeError: 'module' object has no attribute 'create_environment' Traceback (most recent call last): File "get-obitools.py", line 45234, in <module> main() File "get-obitools.py", line 45196, in main envactivate = open(os.path.join(virtualenvname,'bin','activate')).readlines() IOError: [Errno 2] No such file or directory: '/home/genomics/ama/software/obitools/OBITools-1.2.13/bin/activate'

There is an OBITools program installed but when I try to activate it I get the same error message:

You can now use OBITools /usr/bin/bash: /home/genomics/ama/software/obitools/OBITools-1.2.13/bin/activate: No such file or directory

The whole issue is similar to what has been discussed in this thread> #25#

I tried the command suggested by Eric but it does not seem to work and I cannot find any more information on how to solve this online. Can someone please help me with this issue?

Thank you in advance.

Best,

Amalia

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Reference: obitools/obitools#60