Commits · f142d0e904126c4a15bc4770250d99f04dcbe170 · OBITools / ecoprimers

07 Jul, 2009 1 commit

Added thermodynamics properties · f142d0e9

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@221 60f365c0-8329-0410-b2a4-ec073aeeaa1d

committed Jul 07, 2009

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24 Jun, 2009 2 commits

Add minus -R option to localize aplicon over one of the sequence database. · b4d8842f

This option add two column on the right of the output table with the primers location
and the barcode sequence (small patch)

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@220 60f365c0-8329-0410-b2a4-ec073aeeaa1d

committed Jun 24, 2009

b4d8842f Browse Files

Add minus -R option to localize aplicon over one of the sequence database. · 1cae92e9

This option add two column on the right of the output table with the primers location
and the barcode sequence

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@219 60f365c0-8329-0410-b2a4-ec073aeeaa1d

committed Jun 24, 2009

1cae92e9 Browse Files

23 Jun, 2009 1 commit

New option for reference sequence · 3a617890

and bug correction for insequence count

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@218 60f365c0-8329-0410-b2a4-ec073aeeaa1d

committed Jun 23, 2009

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13 May, 2009 4 commits
- git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@216… · 40644bc8
```
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@216 60f365c0-8329-0410-b2a4-ec073aeeaa1d
```
  Eric Coissac committed May 13, 2009
  40644bc8 Browse Files
- git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@215… · c1929084
```
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@215 60f365c0-8329-0410-b2a4-ec073aeeaa1d
```
  Eric Coissac committed May 13, 2009
  c1929084 Browse Files
- Accept to deal with sequence in lower case · b0521a7e
```
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@214 60f365c0-8329-0410-b2a4-ec073aeeaa1d
```
  Eric Coissac committed May 13, 2009
  b0521a7e Browse Files
- New version 0.3 with filtering on short words · b7c16400
```
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@213 60f365c0-8329-0410-b2a4-ec073aeeaa1d
```
  Eric Coissac committed May 13, 2009
  b7c16400 Browse Files
12 May, 2009 5 commits

Some linux patch · 5dc55c7f

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@212 60f365c0-8329-0410-b2a4-ec073aeeaa1d

committed May 12, 2009

5dc55c7f Browse Files

remove final binary from archive · 04ee4e53

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@211 60f365c0-8329-0410-b2a4-ec073aeeaa1d

committed May 12, 2009

04ee4e53 Browse Files

add property to ignore *.P files · b092497e

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@210 60f365c0-8329-0410-b2a4-ec073aeeaa1d

committed May 12, 2009

b092497e Browse Files

remove *.P files · 66241817

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@209 60f365c0-8329-0410-b2a4-ec073aeeaa1d

committed May 12, 2009

66241817 Browse Files

Add option to log memory statistics during primer identifications · 81ada091
```
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@208 60f365c0-8329-0410-b2a4-ec073aeeaa1d
```
Eric Coissac committed May 12, 2009
81ada091 Browse Files

28 Apr, 2009 2 commits
- git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@207… · c5a430ea
```
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@207 60f365c0-8329-0410-b2a4-ec073aeeaa1d
```
  Eric Coissac committed Apr 28, 2009
  c5a430ea Browse Files
- Patch eco_malloc functions to allow more than 4Gb allocation on 64bits version · c308fb2e
```
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@206 60f365c0-8329-0410-b2a4-ec073aeeaa1d
```
  Eric Coissac committed Apr 28, 2009
  c308fb2e Browse Files
23 Apr, 2009 2 commits

some patches to compile on linux · 796274d7

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@205 60f365c0-8329-0410-b2a4-ec073aeeaa1d

committed Apr 23, 2009

796274d7 Browse Files

Second run of patch · c36bc5e8

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@204 60f365c0-8329-0410-b2a4-ec073aeeaa1d

committed Apr 23, 2009

c36bc5e8 Browse Files

22 Apr, 2009 1 commit

First run of patch · 313dd59f

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@203 60f365c0-8329-0410-b2a4-ec073aeeaa1d

committed Apr 22, 2009

313dd59f Browse Files

20 Apr, 2009 4 commits
- git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@202… · e869d6da
```
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@202 60f365c0-8329-0410-b2a4-ec073aeeaa1d
```
  Eric Coissac committed Apr 20, 2009
  e869d6da Browse Files
- git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@201… · 93b32728
```
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@201 60f365c0-8329-0410-b2a4-ec073aeeaa1d
```
  Eric Coissac committed Apr 20, 2009
  93b32728 Browse Files
- Merge of eric-test branche to the trunk · e3d922e1
```
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@200 60f365c0-8329-0410-b2a4-ec073aeeaa1d
```
  Eric Coissac committed Apr 20, 2009
  e3d922e1 Browse Files
- Merge of eric-test branche to the trunk · b8af5dd6
```
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@199 60f365c0-8329-0410-b2a4-ec073aeeaa1d
```
  Eric Coissac committed Apr 20, 2009
  b8af5dd6 Browse Files
04 Mar, 2009 4 commits

New version based on sort them merge algorithm · 4f9d76f0

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@182 60f365c0-8329-0410-b2a4-ec073aeeaa1d

committed Mar 04, 2009

4f9d76f0 Browse Files

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@181… · b5b0ca7e
```
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@181 60f365c0-8329-0410-b2a4-ec073aeeaa1d
```
Eric Coissac committed Mar 04, 2009
b5b0ca7e Browse Files

New version based on sort them merge algorithm · 64838c1c

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@180 60f365c0-8329-0410-b2a4-ec073aeeaa1d

committed Mar 04, 2009

64838c1c Browse Files

delete old version · 6d8bb449

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@179 60f365c0-8329-0410-b2a4-ec073aeeaa1d

committed Mar 04, 2009

6d8bb449 Browse Files

13 Oct, 2008 2 commits

Initial commit for this soft · f9410e5a

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@175 60f365c0-8329-0410-b2a4-ec073aeeaa1d

committed Oct 13, 2008

f9410e5a Browse Files

initial project · f5abbabb

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@172 60f365c0-8329-0410-b2a4-ec073aeeaa1d

committed Oct 13, 2008

f5abbabb Browse Files