Commits · f142d0e904126c4a15bc4770250d99f04dcbe170 · OBITools / ecoprimers

07 Jul, 2009 1 commit

Added thermodynamics properties · f142d0e9

Eric Coissac authored Jul 07, 2009

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@221 60f365c0-8329-0410-b2a4-ec073aeeaa1d

f142d0e9

24 Jun, 2009 2 commits

Add minus -R option to localize aplicon over one of the sequence database. · b4d8842f

Eric Coissac authored Jun 24, 2009

This option add two column on the right of the output table with the primers location
and the barcode sequence (small patch)

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@220 60f365c0-8329-0410-b2a4-ec073aeeaa1d

b4d8842f

Add minus -R option to localize aplicon over one of the sequence database. · 1cae92e9

Eric Coissac authored Jun 24, 2009

This option add two column on the right of the output table with the primers location
and the barcode sequence

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@219 60f365c0-8329-0410-b2a4-ec073aeeaa1d

1cae92e9

23 Jun, 2009 1 commit

New option for reference sequence · 3a617890

Eric Coissac authored Jun 23, 2009

and bug correction for insequence count

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@218 60f365c0-8329-0410-b2a4-ec073aeeaa1d

3a617890

13 May, 2009 4 commits

· 40644bc8

Eric Coissac authored May 13, 2009

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@216 60f365c0-8329-0410-b2a4-ec073aeeaa1d

40644bc8

· c1929084

Eric Coissac authored May 13, 2009

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@215 60f365c0-8329-0410-b2a4-ec073aeeaa1d

c1929084

Accept to deal with sequence in lower case · b0521a7e

Eric Coissac authored May 13, 2009

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@214 60f365c0-8329-0410-b2a4-ec073aeeaa1d

b0521a7e

New version 0.3 with filtering on short words · b7c16400

Eric Coissac authored May 13, 2009

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@213 60f365c0-8329-0410-b2a4-ec073aeeaa1d

b7c16400

12 May, 2009 5 commits

Some linux patch · 5dc55c7f

Eric Coissac authored May 12, 2009

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@212 60f365c0-8329-0410-b2a4-ec073aeeaa1d

5dc55c7f

remove final binary from archive · 04ee4e53

Eric Coissac authored May 12, 2009

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@211 60f365c0-8329-0410-b2a4-ec073aeeaa1d

04ee4e53

add property to ignore *.P files · b092497e

Eric Coissac authored May 12, 2009

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@210 60f365c0-8329-0410-b2a4-ec073aeeaa1d

b092497e

remove *.P files · 66241817

Eric Coissac authored May 12, 2009

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@209 60f365c0-8329-0410-b2a4-ec073aeeaa1d

66241817

Add option to log memory statistics during primer identifications · 81ada091
Eric Coissac authored May 12, 2009
```
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@208 60f365c0-8329-0410-b2a4-ec073aeeaa1d
```
81ada091

28 Apr, 2009 2 commits

· c5a430ea

Eric Coissac authored Apr 28, 2009

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@207 60f365c0-8329-0410-b2a4-ec073aeeaa1d

c5a430ea

Patch eco_malloc functions to allow more than 4Gb allocation on 64bits version · c308fb2e
Eric Coissac authored Apr 28, 2009
```
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@206 60f365c0-8329-0410-b2a4-ec073aeeaa1d
```
c308fb2e

23 Apr, 2009 2 commits

some patches to compile on linux · 796274d7

Eric Coissac authored Apr 23, 2009

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@205 60f365c0-8329-0410-b2a4-ec073aeeaa1d

796274d7

Second run of patch · c36bc5e8

Eric Coissac authored Apr 23, 2009

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@204 60f365c0-8329-0410-b2a4-ec073aeeaa1d

c36bc5e8

22 Apr, 2009 1 commit

First run of patch · 313dd59f

Eric Coissac authored Apr 22, 2009

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@203 60f365c0-8329-0410-b2a4-ec073aeeaa1d

313dd59f

20 Apr, 2009 4 commits

· e869d6da

Eric Coissac authored Apr 20, 2009

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@202 60f365c0-8329-0410-b2a4-ec073aeeaa1d

e869d6da

· 93b32728

Eric Coissac authored Apr 20, 2009

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@201 60f365c0-8329-0410-b2a4-ec073aeeaa1d

93b32728

Merge of eric-test branche to the trunk · e3d922e1

Eric Coissac authored Apr 20, 2009

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@200 60f365c0-8329-0410-b2a4-ec073aeeaa1d

e3d922e1

Merge of eric-test branche to the trunk · b8af5dd6

Eric Coissac authored Apr 20, 2009

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@199 60f365c0-8329-0410-b2a4-ec073aeeaa1d

b8af5dd6

04 Mar, 2009 4 commits

New version based on sort them merge algorithm · 4f9d76f0

Eric Coissac authored Mar 04, 2009

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@182 60f365c0-8329-0410-b2a4-ec073aeeaa1d

4f9d76f0

· b5b0ca7e

Eric Coissac authored Mar 04, 2009

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@181 60f365c0-8329-0410-b2a4-ec073aeeaa1d

b5b0ca7e

New version based on sort them merge algorithm · 64838c1c

Eric Coissac authored Mar 04, 2009

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@180 60f365c0-8329-0410-b2a4-ec073aeeaa1d

64838c1c

delete old version · 6d8bb449

Eric Coissac authored Mar 04, 2009

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@179 60f365c0-8329-0410-b2a4-ec073aeeaa1d

6d8bb449

13 Oct, 2008 2 commits

Initial commit for this soft · f9410e5a

Eric Coissac authored Oct 13, 2008

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@175 60f365c0-8329-0410-b2a4-ec073aeeaa1d

f9410e5a

initial project · f5abbabb

Eric Coissac authored Oct 13, 2008

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@172 60f365c0-8329-0410-b2a4-ec073aeeaa1d

f5abbabb