Commit 9e6b924c authored by Eric Coissac's avatar Eric Coissac

Add a new option -E to considere some example sequences as counterexamples

git-svn-id: 60f365c0-8329-0410-b2a4-ec073aeeaa1d
parent 2737cf06
......@@ -57,6 +57,7 @@ static void PrintHelp()
PP "-l : minimum [L]ength : define the minimum amplication length. \n\n");
PP "-L : maximum [L]ength : define the maximum amplicationlength. \n\n");
PP "-r : [R]estricts the search to the given taxonomic id (restrict the example taxon set).\n\n");
PP "-E : [E]xception taxid allows to indicate than some subclade of example sequences are conterexamples.\n\n");
PP "-c : Consider that the database sequences are [c]ircular\n\n");
PP "-3 : Three prime strict match\n\n");
PP "-q : Strict matching [q]uorum, percentage of the sequences in which strict primers are found. By default it is 70\n\n");
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