Commit 796274d7 by Eric Coissac

some patches to compile on linux

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@205 60f365c0-8329-0410-b2a4-ec073aeeaa1d
parent c36bc5e8
......@@ -6,7 +6,7 @@ PRIMER_OBJ= $(patsubst %.c,%.o,$(PRIMER_SRC))
SRCS= $(PRIMER_SRC)
LIB= -lecoPCR -lecoprimer -lz -lm
LIB= -lecoprimer -lecoPCR -lz -lm
LIBFILE= libecoPCR/libecoPCR.a \
libecoprimer/libecoprimer.a
......@@ -26,7 +26,7 @@ all: $(EXEC)
# executable compilation and link
ecoPrimer: $(PRIMER_OBJ) $(LIBFILE)
$(CC) $(LDFLAGS) -O5 -m64 -fast -o $@ $< $(LIBPATH) $(LIB)
$(CC) $(LDFLAGS) -O5 -m64 -o $@ $< $(LIBPATH) $(LIB)
########
......@@ -55,4 +55,4 @@ clean:
$(MAKE) -C libecoprimer clean
\ No newline at end of file
......@@ -3,7 +3,7 @@ LIBPATH= -Llibapat -LlibecoPCR -Llibecoprimer
MAKEDEPEND = gcc -D$(MACHINE) -M $(CPPFLAGS) -o $*.d $<
CC=gcc
CFLAGS= -W -Wall -O5 -m64 -fast -g
CFLAGS= -W -Wall -O5 -m64
#CFLAGS= -W -Wall -O0 -m64 -g
#CFLAGS= -W -Wall -O5 -fast -g
......@@ -17,4 +17,4 @@ default: all
@sed 's/\($*\)\.o[ :]*/\1.o $@ : /g' < $*.d > $@; \
rm -f $*.d; [ -s $@ ] || rm -f $@
include $(SRCS:.c=.P)
\ No newline at end of file
include $(SRCS:.c=.P)
......@@ -16,4 +16,5 @@ int eco_is_taxid_included( ecotaxonomy_t *taxonomy,
return 1;
return 0;
}
\ No newline at end of file
}
......@@ -39,8 +39,8 @@ ppattern_t buildPatternFromWord(word_t word, uint32_t patlen)
}
#ifdef IS_UPPER(c)
#undef IS_UPPER(c)
#ifdef IS_UPPER
#undef IS_UPPER
#endif
/* -------------------------------------------- */
......
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