ecoprimers issueshttps://git.metabarcoding.org/obitools/ecoprimers/-/issues2017-11-29T14:35:45Zhttps://git.metabarcoding.org/obitools/ecoprimers/-/issues/4"Cannot reallocate strict primer count table"2017-11-29T14:35:45ZCeline Mercier"Cannot reallocate strict primer count table"Someone is getting this error on a Debian 7 machine:
```
./ecoPrimers -d ../mito/mito -O 18 -e 3 -l 10 -L 250 -c -r 6231
Reading taxonomy database ...Ok
Reading sequence database ...
# Reading file ../mito/mito_001.sdx containing 1736 sequences...
Ok
Sequence read : 29
Database is constituted of 29 examples corresponding to 29 species
and 0 counterexamples corresponding to 0 species
Total distinct species count 29
Indexing words in sequences
Filtered sequences 29/ 29 29
ok
Considered word of size 13 for filtering : 12
Primers should be at least present in 20/29 example sequences
Error 2 in file strictprimers.c line 246 : Cannot reallocate strict primer count table
Aborted
```
(I can't replicate this error)Someone is getting this error on a Debian 7 machine:
```
./ecoPrimers -d ../mito/mito -O 18 -e 3 -l 10 -L 250 -c -r 6231
Reading taxonomy database ...Ok
Reading sequence database ...
# Reading file ../mito/mito_001.sdx containing 1736 sequences...
Ok
Sequence read : 29
Database is constituted of 29 examples corresponding to 29 species
and 0 counterexamples corresponding to 0 species
Total distinct species count 29
Indexing words in sequences
Filtered sequences 29/ 29 29
ok
Considered word of size 13 for filtering : 12
Primers should be at least present in 20/29 example sequences
Error 2 in file strictprimers.c line 246 : Cannot reallocate strict primer count table
Aborted
```
(I can't replicate this error)https://git.metabarcoding.org/obitools/ecoprimers/-/issues/3error running ecoprimers (0.3)2017-10-14T01:47:26ZTobias Frøsleverror running ecoprimers (0.3)I am trying to use ecoPrimers to design some primers. But I get an error. Is it possible for you to see what causes this error?:
looks like this:
---
> ecoPrimers -d mito -O 18 -e 3 -l 10 -L 250 -c -r 6231
Reading taxonomy database ...Ok
Reading sequence database ...
Error 2 in file readdnadb.c line 41 : I cannot allocate db memory
Aborted
---
I have downoaded the mito database from here: http://www.grenoble.prabi.fr/trac/ecoPrimers/wiki/EcoPrimersDBI am trying to use ecoPrimers to design some primers. But I get an error. Is it possible for you to see what causes this error?:
looks like this:
---
> ecoPrimers -d mito -O 18 -e 3 -l 10 -L 250 -c -r 6231
Reading taxonomy database ...Ok
Reading sequence database ...
Error 2 in file readdnadb.c line 41 : I cannot allocate db memory
Aborted
---
I have downoaded the mito database from here: http://www.grenoble.prabi.fr/trac/ecoPrimers/wiki/EcoPrimersDBhttps://git.metabarcoding.org/obitools/ecoprimers/-/issues/1extra .P file remaining on the git server blocking the compilation2017-10-14T01:47:27ZEric Coissacextra .P file remaining on the git server blocking the compilationA .P file was committed on the git server and it blocks the compilation.
Please remove it from the git server A .P file was committed on the git server and it blocks the compilation.
Please remove it from the git server