Commit b000ae68 by Eric Coissac

git-svn-id:…

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@90 60f365c0-8329-0410-b2a4-ec073aeeaa1d
parent 2e8c634b
#include "ecoPCR.h"
#include <string.h>
#include <stdlib.h>
static econame_t *readnext_econame(FILE *f,econame_t *name,ecotaxonomy_t *taxonomy);
econameidx_t *read_nameidx(const char *filename,ecotaxonomy_t *taxonomy)
{
int32_t count;
FILE *f;
econameidx_t *indexname;
int32_t i;
f = open_ecorecorddb(filename,&count,1);
indexname = (econameidx_t*) ECOMALLOC(sizeof(econameidx_t) + sizeof(econame_t) * (count-1),"Allocate names");
indexname->count=count;
for (i=0; i < count; i++){
readnext_econame(f,(indexname->names)+i,taxonomy);
}
return indexname;
}
econame_t *readnext_econame(FILE *f,econame_t *name,ecotaxonomy_t *taxonomy)
{
econameformat_t *raw;
int32_t rs;
raw = read_ecorecord(f,&rs);
if (!raw)
return NULL;
if (is_big_endian())
{
raw->is_scientificname = swap_int32_t(raw->is_scientificname);
raw->namelength = swap_int32_t(raw->namelength);
raw->classlength = swap_int32_t(raw->classlength);
raw->taxid = swap_int32_t(raw->taxid);
}
name->is_scientificname=raw->is_scientificname;
name->name = ECOMALLOC((raw->namelength+1) * sizeof(char),"Allocate name");
strncpy(name->name,raw->names,raw->namelength);
name->name[raw->namelength]=0;
name->classname = ECOMALLOC((raw->classlength+1) * sizeof(char),"Allocate classname");
strncpy(name->classname,(raw->names+raw->namelength),raw->classlength);
name->classname[raw->classlength]=0;
name->taxon = taxonomy->taxons->taxon + raw->taxid;
return name;
}
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