DESCRIPTION 1.86 KB
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Package: ROBITools2
Type: Package
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Title: Provides tools to help in the analysing of DNA metabarcoding data.
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Version: 0.1.0
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Author: Eric Coissac
Maintainer: Eric Coissac <eric.coissac@metabarcoding.org>
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Description: More about what it does (maybe more than one line)
    Use four spaces when indenting paragraphs within the Description.
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License: CeCILL-2
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Encoding: UTF-8
LazyData: true
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RoxygenNote: 7.1.1
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VignetteBuilder: knitr
Imports: R6,
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         vctrs (>= 0.3.0),
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         tidyverse,
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         ore,
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         Rdpack,
         rlang,
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         ggplot2,
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         openxlsx,
         progressr
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RdMacros: Rdpack
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Suggests: vegan,
          roxygen2,
          knitr,
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          rmarkdown,
          doParallel
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Collate: 
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    'ROBITools2.R'
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    'utils.R'
    'robiobject.R'
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    'type_robiatomic.R'
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    'alignment.R'
    'robidata.R'
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    'type_robitaxid.R'
    'type_robitag.R'
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    'robiuniqueid.R'
    'robimotu.R'
    'robicategory.R'
    'robisample.R'
    'robimetabar.R'
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    'as_motu_matrix.R'
    'basic_plots.R'
    'clean_ref_db.R'
    'color.R'
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    'contaminent.R'
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    'dplyr.R'
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    'dplyr_robimetabar.R'
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    'ecotag.R'
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    'ecotransform.R'
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    'entropie.R'
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    'geom_dnalogo.R'
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    'lowest_common_ancestor.R'
    'metabar_data_class.R'
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    'taxonomy_methods.R'
    'taxonomy_robi.R'
    'method_ecofind.R'
    'method_is_subclade_of.R'
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    'method_reference_taxonomy.R'
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    'oligotag.R'
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    'parse_sample_ids.R'
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    'randseq.R'
    'rdna.R'
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    'read_ecopcr.R'
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    'robiseq.R'
    'read_obifasta.R'
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    'read_metabar.R'
    'read_ngsfilter.R'
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    'read_obitab.R'
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    'robi4mer.R'
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    'robimetabar_aggregate.R'
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    'robimetabar_filter.R'
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    'robimetabar_stat.R'
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    'robimetabar_store.R'
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    'robimetabar_xlsx.R'
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    'robimutation.R'
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    'robiseq_db.R'
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    'tagjump.R'
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    'tags_categories.R'
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    'taxonomy_default.R'
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    'taxonomy_ncbi.R'
    'taxonomy_obitools.R'
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    'vegan.R'
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    'write_obifasta.R'