Change the package path

51f152cc · Eric Coissac · 0450ebf4 · 51f152cc · 51f152cc · 51f152cc
Commit 51f152cc authored Feb 20, 2018 by Eric Coissac
48 changed files
--- a/ROBITools/DESCRIPTION
+++ b/ROBITools/DESCRIPTION
--- a/ROBITools/LICENSE-SLRE
+++ b/ROBITools/LICENSE-SLRE
--- a/ROBITools/NAMESPACE
+++ b/ROBITools/NAMESPACE
--- a/ROBITools/R/02_class_metabarcoding.data.R
+++ b/ROBITools/R/02_class_metabarcoding.data.R
--- a/ROBITools/R/ROBITools.R
+++ b/ROBITools/R/ROBITools.R
--- a/ROBITools/R/aggregate.R
+++ b/ROBITools/R/aggregate.R
--- a/ROBITools/R/choose.taxonomy.R
+++ b/ROBITools/R/choose.taxonomy.R
--- a/ROBITools/R/contaslayer.R
+++ b/ROBITools/R/contaslayer.R
--- a/ROBITools/R/distrib.extrapol.R
+++ b/ROBITools/R/distrib.extrapol.R
--- a/ROBITools/R/experimental.section.R
+++ b/ROBITools/R/experimental.section.R
--- a/ROBITools/R/export-metabarcoding.R
+++ b/ROBITools/R/export-metabarcoding.R
--- a/ROBITools/R/import.metabarcoding.R
+++ b/ROBITools/R/import.metabarcoding.R
--- a/ROBITools/R/import.ngsfilter.R
+++ b/ROBITools/R/import.ngsfilter.R
--- a/ROBITools/R/layers.metabarcoding.R
+++ b/ROBITools/R/layers.metabarcoding.R
--- a/ROBITools/R/metabarcoding_threshold.R
+++ b/ROBITools/R/metabarcoding_threshold.R
--- a/ROBITools/R/mstat.R
+++ b/ROBITools/R/mstat.R
--- a/ROBITools/R/obiclean.R
+++ b/ROBITools/R/obiclean.R
--- a/ROBITools/R/pcrslayer.R
+++ b/ROBITools/R/pcrslayer.R
--- a/ROBITools/R/plot.PCRplate.R
+++ b/ROBITools/R/plot.PCRplate.R
--- a/ROBITools/R/plot.seqinsample.R
+++ b/ROBITools/R/plot.seqinsample.R
--- a/ROBITools/R/rarefy.R
+++ b/ROBITools/R/rarefy.R
--- a/ROBITools/R/read.ngsfilter.R
+++ b/ROBITools/R/read.ngsfilter.R
--- a/ROBITools/R/read.obitab.R
+++ b/ROBITools/R/read.obitab.R
--- a/ROBITools/R/read.sumatra.R
+++ b/ROBITools/R/read.sumatra.R
--- a/ROBITools/R/s3objects.R
+++ b/ROBITools/R/s3objects.R
--- a/ROBITools/R/taxoDBtree.R
+++ b/ROBITools/R/taxoDBtree.R
--- a/ROBITools/R/taxonomic.resolution.R
+++ b/ROBITools/R/taxonomic.resolution.R
--- a/ROBITools/R/taxonomy_classic_table.R
+++ b/ROBITools/R/taxonomy_classic_table.R
--- a/ROBITools/README-SLRE.md
+++ b/ROBITools/README-SLRE.md
--- a/ROBITools/.gitignore
+++ b/ROBITools/.gitignore
-/man/
-/loopbenchmark.R
-/Read-and-delete-me
--- a/ROBITools/data/termes.rda
+++ b/ROBITools/data/termes.rda
--- a/ROBITools/inst/extdata/termes.fasta
+++ b/ROBITools/inst/extdata/termes.fasta
--- a/ROBITools/inst/extdata/termes.tab
+++ b/ROBITools/inst/extdata/termes.tab
--- a/ROBITools/inst/extdata/termes_ngsfilt.txt
+++ b/ROBITools/inst/extdata/termes_ngsfilt.txt
--- a/ROBITools/src/ecoError.c
+++ b/ROBITools/src/ecoError.c
--- a/ROBITools/src/ecoIOUtils.c
+++ b/ROBITools/src/ecoIOUtils.c
--- a/ROBITools/src/ecoMalloc.c
+++ b/ROBITools/src/ecoMalloc.c
--- a/ROBITools/src/ecoPCR.h
+++ b/ROBITools/src/ecoPCR.h
--- a/ROBITools/src/ecodna.c
+++ b/ROBITools/src/ecodna.c
--- a/ROBITools/src/ecofilter.c
+++ b/ROBITools/src/ecofilter.c
--- a/ROBITools/src/econame.c
+++ b/ROBITools/src/econame.c
--- a/ROBITools/src/ecorank.c
+++ b/ROBITools/src/ecorank.c
--- a/ROBITools/src/ecoseq.c
+++ b/ROBITools/src/ecoseq.c
--- a/ROBITools/src/ecotax.c
+++ b/ROBITools/src/ecotax.c
--- a/ROBITools/src/robitax.c
+++ b/ROBITools/src/robitax.c
--- a/ROBITools/src/robitax.h
+++ b/ROBITools/src/robitax.h
--- a/ROBITools/src/slre.c
+++ b/ROBITools/src/slre.c
--- a/ROBITools/src/slre.h
+++ b/ROBITools/src/slre.h