prior.genotype.Rd 992 Bytes
 Eric Coissac committed Jan 20, 2019 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 % Generated by roxygen2: do not edit by hand % Please edit documentation in R/genotype.R \name{prior.genotype} \alias{prior.genotype} \title{Computes pior probability for a genotype.} \usage{ prior.genotype(haplotype.1, haplotype.2, pHe, log = FALSE) } \arguments{ \item{haplotype.1}{a character indicating the first haplotype (A, C, G, ou T)} \item{haplotype.2}{a character indicating the second haplotype (A, C, G, ou T)} \item{pHe}{A numiric value ranging between 0 and 1, the heterozygote pior probability} \item{log}{logical; if TRUE, probabilities p are given as log(p).} } \value{ A numiric value ranging between 0 and 1, the prior probability of the genotype specified by haplotype.1 and haplotype.2 parameters. } \description{ This function estimates the prior probabilty of a genotype from the prior probability of heterozygosis by supposing equiprobability of genotypes in a class (heterozygote vs homozygote). } \examples{ prior.genotype("A","C",1e-3) }